RahmanTeam / CAVA

CAVA (Clinical Annotation of VAriants)
MIT License
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Installation error : SSL required #6

Open vigneshravi opened 6 years ago

vigneshravi commented 6 years ago

When I try to install v1.2.0 and v1.2.3 using "./install.sh" , I enounter the following error. Any help in fixing this is much appreciated, thanks!

Traceback (most recent call last): File "setup.py", line 130, in get_setuptools.run() File "/opt/FlaskApp/appCGRL/static/CommonAnnotators/CAVAv1.2.0/CAVA-master/pysam-0.7.7/get_setuptools.py", line 89, in run return download() File "/opt/FlaskApp/appCGRL/static/CommonAnnotators/CAVAv1.2.0/CAVA-master/pysam-0.7.7/get_setuptools.py", line 66, in download egg = download_setuptools() File "/opt/FlaskApp/appCGRL/static/CommonAnnotators/CAVAv1.2.0/CAVA-master/pysam-0.7.7/get_setuptools.py", line 79, in download_setuptools src = urllib2.urlopen(url) File "/usr/lib64/python2.7/urllib2.py", line 154, in urlopen return opener.open(url, data, timeout) File "/usr/lib64/python2.7/urllib2.py", line 437, in open response = meth(req, response) File "/usr/lib64/python2.7/urllib2.py", line 550, in http_response 'http', request, response, code, msg, hdrs) File "/usr/lib64/python2.7/urllib2.py", line 475, in error return self._call_chain(args) File "/usr/lib64/python2.7/urllib2.py", line 409, in _call_chain result = func(args) File "/usr/lib64/python2.7/urllib2.py", line 558, in http_error_default raise HTTPError(req.get_full_url(), code, msg, hdrs, fp) urllib2.HTTPError: HTTP Error 403: SSL is required

marton-munz commented 6 years ago

Hi Vignesh, As for v1.2.0, we are aware of this installation error caused by an update in the Python Package Index. That is why we released v1.2.3 in which the issue you described is believed to be fixed, please see: https://groups.google.com/forum/#!topic/cava-user-group/sOBgBjApqWE Could you please double check if you get the same error when installing v1.2.3? Let me know if it works or you still encounter that error. Thanks, Márton

JoshuaMichaelHanson commented 5 years ago

Can confirm still an issue with osX Sierra Version 10.12.6 Replace this line in the setup.sh and should work

pip install --no-cache-dir --ignore-installed --force-reinstall --upgrade pip

curl https://bootstrap.pypa.io/get-pip.py | python