failed installation - Githubissues

Hi my DECoN installation fails in Ubuntu. Below the output of setup.log:

Please help

` installing source* package ‘packrat’ ... package ‘packrat’ successfully unpacked and MD5 sums checked using staged installation R inst byte-compile and prepare package for lazy loading help * installing help indices building package indices testing if installed package can be loaded from temporary location testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path

DONE (packrat) Installing BiocGenerics (0.12.1) ... OK (built source) Installing DBI (0.3.1) ... OK (built source) Installing R.methodsS3 (1.7.0) ... OK (built source) Installing R6 (2.0.1) ... OK (built source) Installing RColorBrewer (1.1-2) ... OK (built source) Installing RJSONIO (1.3-0) ... OK (built source) Installing Rcpp (0.11.6) ... [1] "Command failed (1)\n\nFailed to run system command:\n\n\t'/usr/lib/R/bin/R' --vanilla CMD INSTALL '/tmp/Rtmp2tJxun/Rcpp' --library='/home/faber/BioIT/tools/DECoN-1.0.1/Linux/packrat/lib/x86_64-pc-linux-gnu/3.6.3' --install-tests --no-docs --no-multiarch --no-demo \n\nThe command failed with output:\n installing source* package 'Rcpp' ...\n package 'Rcpp' successfully unpacked and MD5 sums checked\n using staged installation\n* libs\ng++ -std=gnu++11 -I\"/usr/share/R/include\" -DNDEBUG -I../inst/include/ -fpic -g -O2 -fdebug-prefix-map=/build/r-base-V28x5H/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Date.cpp -o Date.o\nIn file included from ../inst/include/Rcpp/Module.h:335:0,\n from ../inst/include/Rcpp.h:64,\n from Date.cpp:31:\n../inst/include/Rcpp/module/Module_Property.h:103:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]\n void set(Class object, SEXP value) throw(std::range_error,Rcpp::not_compatible){\n ^~~\n../inst/include/Rcpp/module/Module_Property.h:161:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]\n void set(Class* object, SEXP value) throw(std::range_error,Rcpp::not_compatible){\n ^\nIn file included from ../inst/include/Rcpp.h:73:0,\n from Date.cpp:31:\n../inst/include/Rcpp/Rmath.h: In function 'double R::pythag(double, double)':\n../inst/include/Rcpp/Rmath.h:222:57: error: '::Rf_pythag' has not been declared\n inline double pythag(double a, double b) { return ::Rf_pythag(a, b); }\n ^~~\n../inst/include/Rcpp/Rmath.h:222:57: note: suggested alternative: 'pythag'\n inline double pythag(double a, double b) { return ::Rf_pythag(a, b); }\n ^~~~~\n pythag\n/usr/lib/R/etc/Makeconf:177: recipe for target 'Date.o' failed\nmake: ** [Date.o] Error 1\nERROR: compilation failed for package 'Rcpp'\n removing '/home/faber/BioIT/tools/DECoN-1.0.1/Linux/packrat/lib/x86_64-pc-linux-gnu/3.6.3/Rcpp'" Error: Command failed (1)

Failed to run system command:

'/usr/lib/R/bin/R' --vanilla CMD INSTALL '/tmp/Rtmp2tJxun/Rcpp' --library='/home/faber/BioIT/tools/DECoN-1.0.1/Linux/packrat/lib/x86_64-pc-linux-gnu/3.6.3' --install-tests --no-docs --no-multiarch --no-demo

The command failed with output:

installing source package 'Rcpp' ... package 'Rcpp' successfully unpacked and MD5 sums checked using staged installation * libs g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include/ -fpic -g -O2 -fdebug-prefix-map=/build/r-base-V28x5H/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Date.cpp -o Date.o In file included from ../inst/include/Rcpp/Module.h:335:0, from ../inst/include/Rcpp.h:64, from Date.cpp:31: ../inst/include/Rcpp/module/Module_Property.h:103:41: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void set(Class obj In addition: There were 15 warnings (use warnings() to see them) Execution halted `

RahmanTeam / DECoN

failed installation #12