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RahmanTeam / DECoN

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Error in makeCNVcall.R - undefined columns selected #23

Open sav0016 opened 3 years ago

sav0016 commented 3 years ago

Hello,

makeCNVcalls.log

I´m getting error during the makeCNVcalls step. Any ideas what could be the cause or how to solve it? Log attached.

Thanks a lot!

J

cfrasier commented 3 years ago

I believe you are facing a similar problem to the once encountered in this issue https://github.com/RahmanTeam/DECoN/issues/11

image

The ExomeDepth package was updated and now the ExomeDepth$space header has been replaced by ExomeDepth$chromosome. The header numbering has changed as well. I believe this is one of the things that packrat was created to solve, but I can't get it to work either :/

sav0016 commented 3 years ago

I believe you are facing a similar problem to the once encountered in this issue #11

image

The ExomeDepth package was updated and now the ExomeDepth$space header has been replaced by ExomeDepth$chromosome. The header numbering has changed as well. I believe this is one of the things that packrat was created to solve, but I can't get it to work either :/

Thank you very much. My problem solved to change all ExomeCount$chromosome to ExomeCount$space ... But now I get error during saving the plots (I get only the txt report with CNVs).

makeCNVcalls.log

Log attached.

J