ERROR when running makeCNVcalls.R

[lmanchon]

--Hello,

execution halted with:

[1] "BEGIN makeCNVCalls.R" [1] "Processing sample: SRR098401 1/2" Optimization of the choice of aggregate reference set, this process can take some time Number of selected bins: 10000 Error in data.frame(ref.samples = dimnames(reference.counts)[[2]], correlations = my.correlations, : arguments imply differing number of rows: 0, 1 Calls: select.reference.set -> data.frame Execution halted

what's wrong ?

[worker000000]

@lmanchon have you fixed this, I met it again

[lmanchon]

no fixed, and i don't know what to do. The authors of DeCON seem to be off !

[worker000000]

@lmanchon my error is such, can you give some suggestion, thanks a lot, maybe the print and dev.off is not that suitable

[lmanchon]

I am not the developer of DECoN, how can I get an answer? DECoN does not seem to be maintained anymore and this project has not been followed.

[worker000000]

@lmanchon Thanks a lot I also do not know that, from my test of standard sample of cnv, decon can not detect them, I tested it because some papers said it is good, the error of my post is in the visulization part,

[beaferbl]

Hi, I had the same error Error in data.frame(ref.samples = dimnames(reference.counts)[[2]], correlations = my.correlations, I solved it adding colnames(my.reference.set)<-sample.names[-i] in the script Now it works