I ran command "Rscript --default-packages=methods,datasets,utils,grDevices,graphics,stats makeCNVcalls.R --Rdata /mac/decov.results.RData --transProb 0.01 --custom TRUE --out /mac/result.call.cnv --plot All --plotFolder /mac/DECoNPlots --exons /mac/H27_exon_coverage_v1.0.1_20210317_sorted_edit_decov.bed" and got the following issue.
It seems from the R package "ExomeDepth"
I ran command "Rscript --default-packages=methods,datasets,utils,grDevices,graphics,stats makeCNVcalls.R --Rdata /mac/decov.results.RData --transProb 0.01 --custom TRUE --out /mac/result.call.cnv --plot All --plotFolder /mac/DECoNPlots --exons /mac/H27_exon_coverage_v1.0.1_20210317_sorted_edit_decov.bed" and got the following issue. It seems from the R package "ExomeDepth"