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RahmanTeam / DECoN

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CNV offsets by one in makeCNVcalls. #44

Open wcarre opened 1 year ago

wcarre commented 1 year ago

After having used the v1 for a long time, I coud not retrieve the CNVs after installing DECoN v2.

I first corrected the script IdentifyFailures.R as mention in the issue #40. but in the next script makeCNVcalls.R there is actually the same issue. Ligne 69: colnames(ExomeCount)[1:length(sample.names)+4]=sample.names it should be colnames(ExomeCount)[1:length(sample.names)+5]=sample.names

Otherwise all the samples / CNV are offsets.

It would be great to fix both of these issues in the git.

thomaslin0426 commented 1 year ago

Thanks you discover! Now I can get the right output of test dataset.