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RajLabMSSM / echoannot

echoverse module: Annotate fine-mapping results
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Provide API access Dey_Deeplearning dataset #7

Open bschilder opened 3 years ago

bschilder commented 3 years ago

Break up and store files from Dey_DeepLearning.tgz in a GitHub repo so users don't have to download entire dataset (37GB).

Extend DEEPLEARNING. to connect to these remote resources by default.

Ideally, will tabix-index all files as well to improve querying speed.

Reference:

Evaluating the informativeness of deep learning annotations for human complex diseases

bschilder commented 3 years ago

Also of potential interest:

Dey_DeepBoost_Imperio annotations.

Reference:

Integrative approaches to improve the informativeness of deep learning models for human complex diseases

bschilder commented 3 years ago

Would like to do the same for SpliceAI results, tho need to check the license agreement first. https://github.com/Illumina/SpliceAI