Integrate additional fine-mapping tools - Githubissues

RajLabMSSM / echofinemap

echoverse module: Statistical and functional fine-mapping functions.

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Integrate additional fine-mapping tools #3

Open bschilder opened 3 years ago

bschilder commented 3 years ago

Fine-mapping

[x] ABF
[x] SUSIE
[x] FINEMAP
[x] PolyFun-SUSIE
[x] PolyFun-FINEMAP
[x] PAINTOR (statistical finemapping)
[x] PAINTOR_annot (finemap with annotations as priors)
[x] PAINTOR_multi (jointly finemap between multiple ZSCORES)
[x] PAINTOR_multiancestry (finemap different multiple LD refs across multiple ZSCORES)
[ ] ANNORE
[ ] JLIM
[ ] CAFEH
[ ] INFIMA
[ ] SparsePro

Colocalization/genetic correlation

Preprocessing/outlier detection

[x] COJO_stepwise
[x] COJO_conditional
[x] COJO_joint
[ ] SLALOM