issues
search
RajLabMSSM
/
echofinemap
echoverse module: Statistical and functional fine-mapping functions.
2
stars
1
forks
source link
Integrate additional fine-mapping tools
#3
Open
bschilder
opened
3 years ago
bschilder
commented
3 years ago
Fine-mapping
[x] ABF
[x] SUSIE
[x] FINEMAP
[x] PolyFun-SUSIE
[x] PolyFun-FINEMAP
[x] PAINTOR (statistical finemapping)
[x] PAINTOR_annot (finemap with annotations as priors)
[x] PAINTOR_multi (jointly finemap between multiple ZSCORES)
[x] PAINTOR_multiancestry (finemap different multiple LD refs across multiple ZSCORES)
[ ]
ANNORE
[ ]
JLIM
[ ]
CAFEH
[ ]
INFIMA
[ ]
SparsePro
Colocalization/genetic correlation
[x]
coloc v2.0
[ ]
coloc.susie
[ ]
LAVA
[ ]
HyPrColoc
Preprocessing/outlier detection
[x] COJO_stepwise
[x] COJO_conditional
[x] COJO_joint
[ ]
SLALOM
Fine-mapping
Colocalization/genetic correlation
Preprocessing/outlier detection