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RajLabMSSM / echolocatoR

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
https://rajlabmssm.github.io/echolocatoR
MIT License
30 stars 11 forks source link

Output installing latest echoverse version #100

Closed AMCalejandro closed 1 year ago

AMCalejandro commented 1 year ago

Hi,

Just wanted to bring to your attention echoLD and echofinemap had non-zero exit status

Code to install echoverse remotes::install_github("RajLabMSSM/echolocatoR@echoverse")

Intallation output

image

bschilder commented 1 year ago

Hey, so the echoverse branch is outdated now. All updates are being push to master.

So just use:

remotes::install_github("RajLabMSSM/echolocatoR")
bschilder commented 1 year ago

Also, could you please include the full output from the installation messages? It looks like the photo you added is just the very end of it. It may be that there's an issue with one of the dependencies for those subpackages, but I can't tell without the full messages.

AMCalejandro commented 1 year ago

Ok, although I have been trying to install both echoverse, and echolocatoR branches, I thought we still needed to install the echoverse branch. Thanks for clarifying.

I am currently trying to rerun the code to install echolocatoR outside the conda environment, as you mentioned in #102

AMCalejandro commented 1 year ago

Sorry, this has been me being clumsy.

Your interpretation in #102 is correct. re-running the code to install and allowing to upgrade is enough.

bschilder commented 1 year ago

No worries, thanks for bearing with the growing pains. I think once all of echolocatoR's functions are stable this should happen less frequently.