`finemap_loci`: Disable/enable `tryCatch`

RajLabMSSM / echolocatoR

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

https://rajlabmssm.github.io/echolocatoR

MIT License

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`finemap_loci`: Disable/enable `tryCatch` #104

Closed bschilder closed 2 years ago

bschilder commented 2 years ago

Currently, I have a tryCatch around each iteration of finemap_locus in finemap_loci This makes it so that if you're running dozens/hundreds of loci, the whole pipeline won't crash because only 1 locus failed.

Nevertheless, this tryCatch prevents tracebacks, so I should either:

Find a way to still use tracebacks with tryCatch
Give users the option to not use tryCatch

bschilder commented 2 years ago

Originally mentioned here: #103

bschilder commented 2 years ago

Now implemented via the new finemap_loci(use_tryCatch) arg. Default is TRUE. Added unit tests to confirm it behaves as I hoped.