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RajLabMSSM / echolocatoR

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
https://rajlabmssm.github.io/echolocatoR
MIT License
30 stars 11 forks source link

ABF fails when running for a qt trait -- proportion_cases is missing #115

Closed AMCalejandro closed 1 year ago

AMCalejandro commented 1 year ago

1. Bug description

Because ABF uses proportion_cases, if running finemapping for a qt trait, ABF will fail

2. Reproducible example

Code

# Paste example here

Console output

# Paste console output here (e.g. from R/python/command line)

Data

3. Session info

(Add output of the R function utils::sessionInfo() below. This helps us assess version/OS conflicts which could be causing bugs.)

``` # Paste utils::sessionInfo() output ```