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RajLabMSSM / echolocatoR

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
https://rajlabmssm.github.io/echolocatoR
MIT License
30 stars 11 forks source link

A valid target path could not be found #134

Open KeXinDING37 opened 1 year ago

KeXinDING37 commented 1 year ago

1. Bug description

When running the example code of echolocatoR::finemap_loci (), an error occurred that a valid target path could not be found.

Looking forward to your reply, thank you!

2. Reproducible example

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3. Session info

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jahi1300 commented 1 year ago

I am also getting a similar issue. Were you able to resolve why this was the case?

eshults89 commented 1 year ago

I am getting this issue, as well. Was anyone able to resolve it?

EllynDunbar commented 1 year ago

I have also been getting similar output, but mine might be due to my work computer running Windows 11 and file paths in R look like this: "..\folder\folder\etc". Any suggestions?

EllynDunbar commented 1 year ago

I have also been getting similar output, but mine might be due to my work computer running Windows 11 and file paths in R look like this: "..\folder\folder\etc". Any suggestions?

It turns out my issue was with the sort by coordinates step, system(cmd) calling grep and sort doesn't work on a Windows system.

1667857557 commented 10 months ago

I have also been getting similar output, but mine might be due to my work computer running Windows 11 and file paths in R look like this: "..\folder\folder\etc". Any suggestions?

It turns out my issue was with the sort by coordinates step, system(cmd) calling grep and sort doesn't work on a Windows system.

Does this R package mean that it cannot be used on a Windows system? Do you have any methods to solve this problem, or should I simply use it on a Linux system instead? I would be very grateful if you could provide some guidance!

Huang huangyufeng@sxmu.edu.cn