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RamsinghLab / arkas

This is the kallisto package
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fix travis #18

Closed arcolombo closed 8 years ago

arcolombo commented 8 years ago

travis went down after these CMD check solutions... probably a minor issue...

arcolombo commented 8 years ago

pairFastqFiles is causing the TRAVIS problem

rowse[4]> debug: fragments <- parseFastqNames(allFiles, extension = extension, readPrefix = readPrefix, lanePrefix = lanePrefix, splitChar = splitChar, ...) Browse[4]> debug: pairedFiles <- .findPairings(fragments) Browse[4]> fragments Stub Read filename 1 MrN 001.fastq.gz MrN_subset_R1_001.fastq.gz 2 MrN 001.fastq.gz MrN_subset_R2_001.fastq.gz Warning messages: 1: In lapply(prefixes, as.numeric) : NAs introduced by coercion 2: In lapply(prefixes, as.numeric) : NAs introduced by coercion 3: In lapply(prefixes, as.numeric) : NAs introduced by coercion

arcolombo commented 8 years ago

will look later this week. but at least here is the "rut" of the problem. AC