mtDNA variant calling - Githubissues

RamsinghLab / atacseeker_app

Illumina BaseSpace ATACseq pipeline.

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mtDNA variant calling #11

Closed asifzubair closed 8 years ago

asifzubair commented 8 years ago

In the VCF file that is produced, the reference has N characters. Need to verify why this is the case. Also, add ability to align to either RSRS or RCRS.

asifzubair commented 8 years ago

this is OK! I'm sticking to RCRS for the heteroplasmy detection.