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RangamaniLabUCSD / smart

https://rangamanilabucsd.github.io/smart/
GNU Lesser General Public License v3.0
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Reaction network #13

Open justinlaughlin opened 4 years ago

justinlaughlin commented 4 years ago

Implement ability to generate a reaction network from a model file.

Pysb and NetworkX are two packages to check out.

Rabona17 commented 4 years ago

Benefits: Allows user to check the reaction process by presenting a visualized reaction graph. Users will be able to check the value of fluxes manually.

Use cases: When the user wants to visualize the reaction process.

Sub issues: 1.Needs to find a good way to assemble fluxes that happened on only one side of the compartment 2.Testing required