lutzfischer
commented
2 years ago Can you send me a config and a minimal mgf file to test that out? Probably better to lutz(dot)fischer tu-berlin.de as this is might be too public.
Closed MNTsnowman closed 2 years ago
lutzfischer
commented
2 years ago Can you send me a config and a minimal mgf file to test that out? Probably better to lutz(dot)fischer tu-berlin.de as this is might be too public.
MNTsnowman
commented
2 years ago Thank you, a mail has been send.
Hi XISearch
I am attempting to analyze my latest dataset for crosslinkers. However, XIsearch crashes every time, it generates the error below. I have tried numerous attempts with different configurations and the result is the same. If you want, you can get the config and the annotations file.
Dec 03, 2021 2:23:29 PM rappsilber.applications.SimpleXiProcessMultipleCandidates process SEVERE: (Search_9) Error while processing spectra java.lang.NullPointerException at rappsilber.ms.score.FragmentLibraryScore.score(FragmentLibraryScore.java:67) at rappsilber.applications.SimpleXiProcess.evaluateMatch(SimpleXiProcess.java:1860) at rappsilber.applications.SimpleXiProcessLinearIncluded.evaluateMatch(SimpleXiProcessLinearIncluded.java:772) at rappsilber.applications.SimpleXiProcessMultipleCandidates.process(SimpleXiProcessMultipleCandidates.java:518) at rappsilber.applications.SimpleXiProcess$SearchRunner.run(SimpleXiProcess.java:208) at java.lang.Thread.run(Unknown Source)
Dec 03, 2021 2:23:30 PM rappsilber.applications.SimpleXiProcessMultipleCandidates process INFO: (Search_28)Spectra Read 64300
Dec 03, 2021 2:23:30 PM rappsilber.applications.SimpleXiProcessMultipleCandidates process INFO: (Search_20)Spectra Read 64300
Dec 03, 2021 2:23:30 PM rappsilber.applications.SimpleXiProcessMultipleCandidates process INFO: (Search_22)Spectra Read 64300
Dec 03, 2021 2:23:30 PM rappsilber.applications.SimpleXiProcessMultipleCandidates process INFO: (Search_21)Spectra Read 64300
java.lang.NullPointerException java.lang.NullPointerException at rappsilber.ms.score.FragmentLibraryScore.score(FragmentLibraryScore.java:67) at rappsilber.applications.SimpleXiProcess.evaluateMatch(SimpleXiProcess.java:1860) at rappsilber.applications.SimpleXiProcessLinearIncluded.evaluateMatch(SimpleXiProcessLinearIncluded.java:772) at rappsilber.applications.SimpleXiProcessMultipleCandidates.process(SimpleXiProcessMultipleCandidates.java:518) at rappsilber.applications.SimpleXiProcess$SearchRunner.run(SimpleXiProcess.java:208) at java.lang.Thread.run(Unknown Source)
Do you have any clue what this could be?
Kind Regards Martin