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Rappsilber-Laboratory / XiSearch

XiSearch
Apache License 2.0
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mzid file is not created after data processing #99

Closed Ke-Pu closed 3 months ago

Ke-Pu commented 5 months ago

20240326 Error.txt

Dear Rappsilber lab,

I am Ke Pu from FMP Berlin. Recently I met an error message about xiSearch, it doesn't create mzid file after data processing, I have copied the error message for your information. Could you please help me to figure it out? Thanks.

Best regards Pu Ke

grandrea commented 4 months ago

Hello,

is this from running FDR inside xiSEARCH or from running xiFDR as a standalone application?

This problem looks like the ExceptionInitializer bug. This is easily avoided adding a flag to the xiSEARCH or xiFDR launcher as described here https://github.com/Rappsilber-Laboratory/xiFDR?tab=readme-ov-file#mzidentml-output

lutzfischer commented 3 months ago

The problem is that newer version of java have some additional security restrictions. Do address these some additional parameters are needed when starting xiSEARCH. The newest version will restart themself with the needed parameters.