abspos1 error

[ajungblut]

Hi, I am getting the following error:

log id: 61s2ebjctdcq01v174a6fcm1db_1698151772.log (include this in the github issue) error type: Error message: Required csv column abspos1 missing id: undefined

I have created a test csv file that includes columns for PepSeq1/2, PepPos1/2, LinkPos1/2, Protein1/2. I changed due to this message LinkPos1/2 to abspos1/2 but I still get the same error. What am I doing wrong? Thanks for your help! Best, Anna

[colin-combe]

Hi Anna,

I have created a test csv file that includes columns for PepSeq1/2, PepPos1/2, LinkPos1/2, Protein1/2. I changed due to this message LinkPos1/2 to abspos1/2 but I still get the same error. What am I doing wrong?

If you send the test csv file before you changed it to include abspos1 and abspos2 (i.e. with the peptide information) then i will check it and try to let you know whats going wrong, cheers, Colin

[colin-combe]

(you can attach the test file here or email it to me at colin.combe@ed.ac.uk if that's easier)

[ajungblut]

Dear Colin,

Thanks for your prompt reply :-) I attached the file. I just used that as a test before I include my real data to make trouble shooting easier.

Many thanks for your help! Best, Anna

test.csv

[colin-combe]

Hi - i haven't tested it yet, but from a quick look i think the problem is that it uses semi-colons to delimit the fields rather than commas? Also this has the abspo1 and abspos2 columns in it which shouldn't be there when you're providing the peptide sequences and positions. (Providing the peptide sequences and positions is the better way to use the tool.)

If you revert to your original file and replace the semi-colons with commas then does it work?

[ajungblut]

Having semi-colons was indeed the problem. Sorry for bothering you with such a stupid problem! Thanks for your quick help :-)

[colin-combe]

no problem!