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Rappsilber-Laboratory / xi-mzidentml-converter

Apache License 2.0
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empty results #13

Closed weizhiting closed 9 months ago

weizhiting commented 5 years ago

Hi, i use crux to search my mass data, and upload mgf and mzid data , but alway get error? I just can not figure it out

lars-kolbowski commented 5 years ago

Hi, easiest would be if you could provide me an example of a dataset that fails. Or copy paste the error log from the parsing. Otherwise I can only guess what's going wrong.

weizhiting commented 5 years ago

log id: md4tqsio9ijqb1tu8e0det2mm6_1544008241.log (include this in the github issue) error type: Error message: SpectrumIDFormat id: undefined

this is the error log! Thanks for your reply.

lars-kolbowski commented 5 years ago

I'm afraid your mzIdentML file is missing crucial information. I think it's not valid mzIdentML. The SpectraData field(s) are missing the SpectrumIDFormat. It is necessary information on how to link the spectrumIDs from the identification file (mzid) to the peak list file. It's a required field according to mzIdentML schema since at least v1.1.0. What software did you use to generate that mzIdentML? Does crux export it?

this is for tide_search.mzid you tried uploading with log_id: md4tqsio9ijqb1tu8e0det2mm6_1544008241