adds parameter to writer.py for upload id, needed for xiview public, where upload_id won't be uuid (to make it easier to update existing xiview database)
added update_pg.sql, which should update existing xiview db so it works with new parser
reads and stores both avg mass delta and monoisotopic mass delta for mod's (think we decided to do that)
renames columns for modifications in ModifiedPeptide (thought they were getting a bit long)
fixes main method so it at least runs
adds parameter to writer.py for upload id, needed for xiview public, where upload_id won't be uuid (to make it easier to update existing xiview database)
added update_pg.sql, which should update existing xiview db so it works with new parser
reads and stores both avg mass delta and monoisotopic mass delta for mod's (think we decided to do that)
renames columns for modifications in ModifiedPeptide (thought they were getting a bit long)