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Rappsilber-Laboratory / xiFDR

Generic FDR-Calculation for cross-linked PSMs and resulting peptide pairs, links and protein pairs
Apache License 2.0
5 stars 2 forks source link

A fatal exception has occurred. Program will exit. #27

Open yuanxiaoustc opened 2 years ago

yuanxiaoustc commented 2 years ago

All Results : 9637 Top Matches : 9637 四月 26, 2022 9:25:58 上午 rappsilber.ui.LoggingStatus setStatus 信息: completed 四月 26, 2022 9:25:58 上午 rappsilber.ui.LoggingStatus setStatus 信息: completed 四月 26, 2022 9:25:58 上午 rappsilber.ui.LoggingStatus setStatus 信息: calling xiFDR: C:\Program Files\Java\jdk1.8.0_201\bin\java.EXE -Dfile.encoding=UTF-8 --add-opens java.base/java.lang=ALL-UNNAMED -jar C:\Users\Administrator\Desktop\Xisearch\xiSEARCH_1.7.6.5\xiSEARCH_1.7.6.5\xiFDR-2.1.5.5.jar --linkfdr=5.0 --boost=link --csvOutDir=C:\Users\Administrator\Desktop\CCAN-TRY\FDR_rpfdr5.0 --csvBaseName=123456_Xi1.7.6.5 --xiconfig=C:\Users\Administrator\Desktop\CCAN-TRY\123456_Xi1.7.6.5.csv.config --fasta=C:\Users\Administrator\Desktop\CCAN-TRY\polII-uniprot.fasta --gui C:\Users\Administrator\Desktop\CCAN-TRY\123456_Xi1.7.6.5.csv Error: Could not create the Java Virtual Machine. 四月 26, 2022 9:25:58 上午 rappsilber.ui.LoggingStatus setStatus 信息: Error while running FDR Error: A fatal exception has occurred. Program will exit. Unrecognized option: --add-opens

How to solve this error？

lutzfischer commented 2 years ago

can you try to replace the xiSEACRH.jar file with the one from here?

You probably need to adapt the startXiWindows.bat file