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Rappsilber-Laboratory / xiview

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Can not load XiSearch UV-crosslinking result to XiView #563

Closed WeiqiangChen closed 3 months ago

WeiqiangChen commented 5 months ago

I can not load XiSearch result of UV-crosslinking, diazK. It showed the following error.

log id: 9irk5qs9lc9djt93jbkpknb7pp_1714456729.log (include this in the github issue) error type: Error message: name id: undefined

I also tried to remove the (photo) in the fasta and got the same error.

colin-combe commented 5 months ago

i suspect this: https://github.com/Rappsilber-Laboratory/xiFDR/issues/39

also, https://github.com/Rappsilber-Laboratory/xiview/issues/561

Could you search the mzId file for <cvParam></cvParam>? If you find it then that is the problem and replacing them with empty strings may make it work.

if that fixes it maybe comment on https://github.com/Rappsilber-Laboratory/xiFDR/issues/39 asking for fix

WeiqiangChen commented 5 months ago

I replaced the whole line with empty in Notepad++. Now it works. Thanks!