RasmussenLab / MOVE

MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations
https://move-dl.readthedocs.io/
MIT License
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Perturbations with categorical target data #101

Open bnglomics opened 2 days ago

bnglomics commented 2 days ago

Hi there, Is there a way readily change the *_id_assoc_bayes/ttest.yaml file to account for multiple levels of "drug". For example, I have survey data where the responses are coded as integers from 1 to 5, corresponding to my interventions.. Thank you!!

defaults:

batch_size: 10

num_refits: 40

target_dataset: survey_data target_value: 1 <-- how would I change this save_refits: True

model: num_hidden:

training_loop: lr: 1e-4 num_epochs: 40

bnglomics commented 1 day ago

ok, never mind! I can do one-hot encoding as in the paper :)