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RasmussenLab
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MOVE
MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations
https://move-dl.readthedocs.io/
MIT License
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:bug: Fix dataloader creation
#51
ri-heme
closed
1 year ago
0
Developer docstrings
#50
valentas1
closed
1 year ago
0
✨ 📌 Fix Hydra version, update read config method
#49
ri-heme
closed
2 years ago
0
👩🏽🏫 Update tutorial
#48
ri-heme
opened
2 years ago
0
♻️ Refactor tune model
#47
ri-heme
closed
2 years ago
0
♻️ Refactor tune model
#46
ri-heme
closed
2 years ago
0
🐛 Hotfix latent space
#45
ri-heme
closed
2 years ago
0
♻️ Refactor latent space analysis
#44
ri-heme
closed
2 years ago
0
Expected MOVE tutorial runtime?
#43
fotiniak
closed
1 year ago
2
♻️ Refactor analyze latents task
#42
ri-heme
closed
2 years ago
0
Clean-up config files
#41
ri-heme
closed
1 year ago
0
Re-structure module 4 (analyze latent)
#40
ri-heme
closed
2 years ago
0
Remove number of samples from categorical shapes
#39
ri-heme
closed
1 year ago
0
Use Hydra multirun mode to do optimization tasks
#38
ri-heme
closed
1 year ago
0
✨ Bayesian approach
#37
ri-heme
closed
2 years ago
0
Setting groups
#36
simonrasmu
opened
2 years ago
0
NA class is created even without NA in categorical data
#35
mpielies
closed
2 years ago
2
04_analyze_latent fails due to hardcoded values
#34
simonrasmu
closed
2 years ago
0
Perturbations with continuous data
#33
simonrasmu
opened
2 years ago
0
Developer logging
#32
valentas1
closed
2 years ago
0
🎨 Format docstrings
#31
ri-heme
closed
1 year ago
2
02_optimize_reconstruction write out results
#30
simonrasmu
closed
1 year ago
1
Two functions in 05_identify_associations does not work
#29
simonrasmu
closed
2 years ago
2
05_identify_associations: write results in tsv table format
#28
simonrasmu
closed
2 years ago
0
plot_reconstruction
#27
simonrasmu
closed
1 year ago
1
✨ Bayesian approach + other changes
#26
ri-heme
closed
2 years ago
0
Make each module output to its own folder
#25
simonrasmu
closed
1 year ago
1
Identify associations writes out thousands of files
#24
simonrasmu
closed
2 years ago
4
Add more user info on step 05
#23
simonrasmu
closed
2 years ago
1
Best latent representation
#22
simonrasmu
opened
2 years ago
0
stability plots x-labels can't be seen
#21
simonrasmu
closed
2 years ago
1
Simplify plotting functions
#20
simonrasmu
closed
1 year ago
0
tuning_stability.yaml
#19
simonrasmu
closed
2 years ago
6
Add Bayesian decision method as an option for identify_associations
#18
simonrasmu
closed
2 years ago
0
Rename 05_identify_drug_assosiation
#17
simonrasmu
closed
2 years ago
2
Reduce memory of step 05
#16
simonrasmu
closed
2 years ago
3
Use of log-file
#15
simonrasmu
closed
2 years ago
1
defining entrypoints
#14
enryH
closed
2 years ago
8
`requirments.txt`
#13
enryH
closed
1 year ago
2
Increment the version for pypi package
#12
valentas1
closed
2 years ago
0
Developer
#11
valentas1
closed
2 years ago
0
MOVE package update
#10
valentas1
closed
2 years ago
0
📦 Set up package and configuration
#9
ri-heme
closed
2 years ago
0
Set up configuration system
#8
ri-heme
closed
2 years ago
0
Set-up CI workflow
#7
ri-heme
opened
2 years ago
1
Adhere to PEP8 style guide
#6
ri-heme
closed
1 year ago
0
Organize code
#5
ri-heme
closed
2 years ago
0
✨ Maize dataset tutorial
#4
ri-heme
closed
2 years ago
0
Update README.md
#3
simonrasmu
closed
2 years ago
0
add a folder with random data for github
#2
valentas1
closed
2 years ago
0
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