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RasmussenLab / phamb

Downstream processing of VAMB binning for Viral Elucidation
MIT License
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Including micomplete Arch131 and/or VIBRANT annotations? #39

Open kellifeeser opened 2 years ago

kellifeeser commented 2 years ago

Hi there,

Is it possible to modify the RF script to incorporate both the micomplete Bact105.hmm and the micomplete Arch131.hmm as input annotations?

Similarly, I'd prefer to use VIBRANT annotations over DeepVirFinder. Is this also possible to do?

Thank you!

joacjo commented 1 year ago

Hi Kellifeeser

Apologize for the super late response. I will definitely consider incorporating both Bact105 and Arch131.

First, Incorporating VIBRANT annotations over DeepVirFinder would require re-training the Random Forest model. Second, what VIBRANT score would you like to use as the tool provides a genome quality score? Estimated completeness? Please expand on your idea :-)

Best, Joachim