split_contigs.py produces empty files

[Sanrrone]

Dears, I am trying to run phamb (cloned repo) in parallel and when I used split_contigs.py as the code below

python split_contigs.py -c contigs.fna.gz

it is produces and empty ´assembly´ folder and an empty ´sample_table.txt´ file. I tried with an gunziped contig file and is the same result. What should I do?

thanks in advance!, Sandro

[joacjo]

Hi Sandro

Apologise for the late response.

It sounds like your contigs are not named in a way that works with the script. Can you show me an example of your contig headers?

Best, Joachim