how to evaluate the bin-annotations?

[ChaoXianSen]

Hi ! the results vambbins_aggregated_annotation.txt. and vambbins_RF_predictions.txt, which one to use to evaluate???

thanks!

[joacjo]

Hi Chao

Actually, you should not spend too much time evaluating these files, they are used internally by Phamb to sort out bins but you should focus on the CheckV output of your bins.

Remember to run an external virus evaulation tool, something like Checkv: checkv end_to_end resultsdir/vamb_bins/vamb_bins.1.fna checkv_vamb_bins