ls resultsidr
resultdir/vambbins_aggregated_annotation.txt
resultdir/vambbins_RF_predictions.txt
resultsdir/vamb_bins #Concatenated predicted viral bins
the result 'vamb_bins/vamb_bins.1.fna' is viral bins , could I consider it as a viral contig ?
because in some research paper, viral detection comes directly from assembly result, without binning of assembly contigs.
viral bins and viral contig ,could I consider these two concepts as the same?
Hi @joacjo
run_RF.py contigs.fna.gz vamb/clusters.tsv annotations resultdir
ls resultsidr resultdir/vambbins_aggregated_annotation.txt resultdir/vambbins_RF_predictions.txt resultsdir/vamb_bins #Concatenated predicted viral bins
the result 'vamb_bins/vamb_bins.1.fna' is viral bins , could I consider it as a viral contig ? because in some research paper, viral detection comes directly from assembly result, without binning of assembly contigs.
viral bins and viral contig ,could I consider these two concepts as the same?
Look forward your reply , thanks a lot !