:bug: Windows-latest is not windows desktop, but server

RasmussenLab / pimms

Imputing proteomics data using deep learning models

https://pimms.readthedocs.io

GNU General Public License v3.0

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:bug: Windows-latest is not windows desktop, but server #47

Closed enryH closed 1 year ago

enryH commented 1 year ago

Installing all NAGuideR dependencies fails if bioconductor images are used, as the github action testing with windows-latest is using windows server which seems to be compatible with noarch linux packages.

Will probably be good to support NAGuideR trough a separate environment linked to the Snakemake rule and provide instructions on how to install dependencies on windows.

enryH commented 1 year ago

[ ] remove bioconductor packages from environment file for windows version
[ ] provide instruction how to manually install packages using BiocManager::install function for impute and pcaMethods.

BiocManager::install(c("impute", "pcaMethods")) # to be tested