Closed enryH closed 3 months ago
:bug: test if specifiying minimal version of matplotlib works
colorbar need location parameter
:zap: switch to separate environments for execution
move tests around a bit
comparions needs it's own environment (ToDo)
! still needs to be documented if this works
:bug: specify environments in v2 workflow, add ipykernel as dep in action
:bug: conda environment not allowed with run directive
:memo: update link to miniforge
:bug: specify pimms env and move code to script
run does not allow conda env to be specified
:bug: restrict matplotlib to 3.8 or lower
looks matplotlib change their API in 3.9
:bug: clean-up environments to free disk space
out-of-memory in GitHub runner
:bug: remove .snakemake folder manually
disk space wasn't freed otherwise
one global pimms environment next to a R environment might be the better solution.
:art: update miniconda
list files in project folder (to check if .snakemake is deleted)
:white_check_mark: start testing more functionality
:construction: fix matplotlib version for now
seaborn lock needs to be removed to fix that.
:construction: intermediate save
to revert
:bug: fixture are cached - reload explicitly
Some state fails (both test work individually with the fixtures, but not if the other is run first - the second one fails) Can be both orders...
fix: reload the data explicitly, no caching
:bug: pytest error due to side effects
running order matters...
test_errors.py
test_models.py
made some adoptions to other tests which clutter the commit a bit.
:bug: ignore dtype for windows
int32 vs int64 defaults on different OS?
:bug: fix line endind error in string for windows
:bug: another Win line break error
:art: don't create files on the fly per default
change folder to None and pass explicitly
Switch to trunk-based-development
enryH
commented
3 months ago enryH
commented
3 months ago
:bug: test if specifiying minimal version of matplotlib works
colorbar need location parameter
:zap: switch to separate environments for execution
move tests around a bit
comparions needs it's own environment (ToDo)
! still needs to be documented if this works
:bug: specify environments in v2 workflow, add ipykernel as dep in action
:bug: conda environment not allowed with run directive
:memo: update link to miniforge
:bug: specify pimms env and move code to script
run does not allow conda env to be specified
:bug: restrict matplotlib to 3.8 or lower
looks matplotlib change their API in 3.9
:bug: clean-up environments to free disk space
out-of-memory in GitHub runner
:bug: remove .snakemake folder manually
disk space wasn't freed otherwise
one global pimms environment next to a R environment might be the better solution.
:art: update miniconda
list files in project folder (to check if .snakemake is deleted)
:white_check_mark: start testing more functionality
:construction: fix matplotlib version for now
seaborn lock needs to be removed to fix that.
:construction: intermediate save
to revert
:bug: fixture are cached - reload explicitly
Some state fails (both test work individually with the fixtures, but not if the other is run first - the second one fails) Can be both orders...
fix: reload the data explicitly, no caching
:bug: pytest error due to side effects
running order matters...
test_errors.pyfails iftest_models.pyis run before. I don't know fastai or other might change in the state.test_errors.pyworks fine, running it before as well.made some adoptions to other tests which clutter the commit a bit.
:bug: ignore dtype for windows
int32 vs int64 defaults on different OS?
:bug: fix line endind error in string for windows
:bug: another Win line break error
:art: don't create files on the fly per default
change folder to None and pass explicitly