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RaverJay / CholerAegon

Pipeline for assembly and antimicrobial resistance gene detection
GNU General Public License v3.0
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Custom thresholds for AMR genes to keep #1

Closed RaverJay closed 2 years ago

RaverJay commented 2 years ago

added parameters for custom cutoffs for AMR genes to keep: --min_coverage_percent –min_identity_percent

used in combine_results.py