Open JavariaAshraf opened 4 months ago
Hi RaverJay, I am trying to use your pipeline from a long time but unable to.Please help me understand and fix this following error.
Error executing process > 'prepare_fasta (24)' Caused by: Process prepare_fasta (24) terminated with an error exit status (2) Command executed: mkdir fixed_name for F in .fa .fasta *.fna; do if [ -e "$F" ]; then ln -s $F fixed_names/VC28_R2.fasta Command exit status: 2 Command output: (empty) Command error: .command.sh: line 6: syntax error: unexpected end of file.
Error executing process > 'prepare_fasta (24)'
Caused by: Process prepare_fasta (24) terminated with an error exit status (2)
prepare_fasta (24)
Command executed:
mkdir fixed_name for F in .fa .fasta *.fna; do if [ -e "$F" ]; then ln -s $F fixed_names/VC28_R2.fasta
Command exit status: 2
Command output: (empty)
Command error: .command.sh: line 6: syntax error: unexpected end of file.
I have tried both shortreads and fasta file methods but the error is same. Please guide. Thanks, Javaria
Hi, please paste the full command(s) you used and kindly include a preview of the .fasta file you supplied
Please retry with the newest version (-r 0.3.1) - fixed some glaring bugs
-r 0.3.1
Hi RaverJay, I am trying to use your pipeline from a long time but unable to.Please help me understand and fix this following error.
I have tried both shortreads and fasta file methods but the error is same. Please guide. Thanks, Javaria