eddelbuettel
commented
1 year ago Please see the 'Issues' for prior discussions on
Open tlkoh0727 opened 1 year ago
eddelbuettel
commented
1 year ago Please see the 'Issues' for prior discussions on
Good Day!
Redhat Linux 7.9 R version 4.2.3 RcppParallel 5.1.7 gcc version 4.8
When installing RcppParallel using the command R CMD INSTALL RcppParallel_5.1.7.tar.gz it fails with below error:
/tmp/RtmpLGkjWv/R.INSTALL711a1df2519e/RcppParallel/src/tbb/src' OS: linux arch=intel64 compiler=gcc runtime=cc4.8.5_libc2.17_kernel3.10.0 tbb_build_prefix=linux_intel64_gcc_cc4.8.5_libc2.17_kernel3.10.0 work_dir=/tmp/RtmpLGkjWv/R.INSTALL711a1df2519e/RcppParallel/src/build/linux_intel64_gcc_cc4.8.5_libc2.17_kernel3.10.0_release make[1]: Leaving directory/tmp/RtmpLGkjWv/R.INSTALL711a1df2519e/RcppParallel/src/tbb/src' make[1]: Entering directory/tmp/RtmpLGkjWv/R.INSTALL711a1df2519e/RcppParallel/src/tbb/src' Created ../build/lib_release directory make -C "../build/lib_release" -r -f ../../build/Makefile.tbb cfg=release make[2]: Entering directory/tmp/RtmpLGkjWv/R.INSTALL711a1df2519e/RcppParallel/src/tbb/build/lib_release' ../../build/Makefile.tbb:28: CONFIG: cfg=release arch=intel64 compiler=gcc target=linux runtime=cc4.8.5_libc2.17_kernel3.10.0 g++ -I../inst/include -o concurrent_hash_map.o -c -MMD -DDO_ITT_NOTIFY -O2 -DUSE_PTHREAD -m64 -mrtm -fpic -D__TBB_BUILD=1 -Wall -Wextra -g -O2 -DTBB_NO_LEGACY=1 -I../../src -I../../src/rml/include -I../../include ../../src/tbb/concurrent_hash_map.cpp In file included from ../../include/tbb/concurrent_hash_map.h:26:0, from ../../src/tbb/concurrent_hash_map.cpp:17: ../../include/tbb/compat/iterator.h:19:11: error: expected nested-name-specifier before ‘iterator_category’ using iterator_category = Category; ^ ../../include/tbb/compat/iterator.h:19:11: error: using-declaration for non-member at class scope ../../include/tbb/compat/iterator.h:19:29: error: expected ‘;’ before ‘=’ token using iterator_category = Category; ^ ../../include/tbb/compat/iterator.h:19:29: error: expected unqualified-id before ‘=’ token ../../include/tbb/compat/iterator.h:20:11: error: expected nested-name-specifier before ‘value_type’ using value_type = T; ^ ../../include/tbb/compat/iterator.h:20:11: error: using-declaration for non-member at class scope ../../include/tbb/compat/iterator.h:20:22: error: expected ‘;’ before ‘=’ token using value_type = T; ^ ../../include/tbb/compat/iterator.h:20:22: error: expected unqualified-id before ‘=’ token ../../include/tbb/compat/iterator.h:21:11: error: expected nested-name-specifier before ‘difference_type’ using difference_type = Distance; ^ ../../include/tbb/compat/iterator.h:21:11: error: using-declaration for non-member at class scope ../../include/tbb/compat/iterator.h:21:27: error: expected ‘;’ before ‘=’ token using difference_type = Distance; ^ ../../include/tbb/compat/iterator.h:21:27: error: expected unqualified-id before ‘=’ token ../../include/tbb/compat/iterator.h:22:11: error: expected nested-name-specifier before ‘pointer’ using pointer = Pointer; ^ ../../include/tbb/compat/iterator.h:22:11: error: using-declaration for non-member at class scope ../../include/tbb/compat/iterator.h:22:19: error: expected ‘;’ before ‘=’ token using pointer = Pointer; ^ ../../include/tbb/compat/iterator.h:22:19: error: expected unqualified-id before ‘=’ token ../../include/tbb/compat/iterator.h:23:11: error: expected nested-name-specifier before ‘reference’ using reference = Reference; ^ ../../include/tbb/compat/iterator.h:23:11: error: using-declaration for non-member at class scope ../../include/tbb/compat/iterator.h:23:21: error: expected ‘;’ before ‘=’ token using reference = Reference; ^ ../../include/tbb/compat/iterator.h:23:21: error: expected unqualified-id before ‘=’ token make[2]: [concurrent_hash_map.o] Error 1 make[2]: Leaving directory/tmp/RtmpLGkjWv/R.INSTALL711a1df2519e/RcppParallel/src/tbb/build/lib_release' make[1]: *** [tbb_release] Error 2 make[1]: Leaving directory/tmp/RtmpLGkjWv/R.INSTALL711a1df2519e/RcppParallel/src/tbb/src' g++ -std=gnu++11 -I"/opt/opensource/R/R-4.2.3/lib64/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -std=gnu++11 -DRCPP_PARALLEL_USE_TBB=1 -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fpic -g -O2 -c init.cpp -o init.o g++ -std=gnu++11 -I"/opt/opensource/R/R-4.2.3/lib64/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -std=gnu++11 -DRCPP_PARALLEL_USE_TBB=1 -DTBB_SUPPRESS_DEPRECATED_MESSAGES=1 -fpic -g -O2 -c options.cpp -o options.o g++ -std=gnu++11 -shared -L/opt/opensource/R/R-4.2.3/lib64/R/lib -L/usr/local/lib64 -o RcppParallel.so init.o options.o -L/opt/opensource/R/R-4.2.3/lib64/R/lib -lR installing via 'install.libs.R' to /opt/opensource/R/R-4.2.3/lib64/R/library/00LOCK-RcppParallel/00new/RcppParallel R inst byte-compile and prepare package for lazy loading help * installing help indices building package indices ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for ‘RcppParallel’: .onLoad failed in loadNamespace() for 'RcppParallel', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/opt/opensource/R/R-4.2.3/lib64/R/library/00LOCK-RcppParallel/00new/RcppParallel/libs/RcppParallel.so': /opt/opensource/R/R-4.2.3/lib64/R/library/00LOCK-RcppParallel/00new/RcppParallel/libs/RcppParallel.so: undefined symbol: _ZN3tbb10interface58internal9task_base7destroyERNS_4taskE Error: loading failed Execution halted ERROR: loading failedAs noticed as well, the folder path and file 00LOCK-RcppParallel/00new/RcppParallel/libs/RcppParallel.so was not created Appreciate any suggestions.
Thanks