Refactoring AutoTST with USRRI Standards

[nateharms]

After attending the URSSI winter school, there were some ideas that came forth to improve the quality of code. The changes are as follows:

• changing of absolute imports to relative imports
• renaming camel case file to snake case (specific for test.py files)
• updated the environment file to include the latest release of RMG

There should be no functionality change in this PR.

[codecov[bot]]

Codecov Report

Merging #54 into master will decrease coverage by 0.52%. The diff coverage is 82.77%.

@@            Coverage Diff             @@
##           master      #54      +/-   ##
==========================================
- Coverage   63.25%   62.73%   -0.53%     
==========================================
  Files          27       27              
  Lines        4629     4564      -65     
==========================================
- Hits         2928     2863      -65     
  Misses       1701     1701

Impacted Files	Coverage Δ
autotst/geometry_test.py	98.59% <100%> (ø)
autotst/reaction_test.py	99.49% <100%> (ø)
autotst/calculator/vibrational_analysis.py	86.3% <100%> (ø)	:arrow_up:
autotst/data/base_test.py	99.01% <100%> (ø)
autotst/conformer/utilities_test.py	95% <100%> (ø)
autotst/data/inputoutput.py	65.25% <100%> (-0.3%)	:arrow_down:
autotst/data/inputoutput_test.py	93.75% <100%> (ø)
autotst/calculator/orca_test.py	97.05% <100%> (ø)
autotst/calculator/orca.py	83.51% <100%> (-0.18%)	:arrow_down:
autotst/data/update_test.py	54.54% <100%> (ø)
... and 15 more

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[rwest]

Oh, and perhaps try an interactive rebase onto master to clean up the spider's web history a bit?

You might not care, but it's good practice for other shared codebases :)

[nateharms]

@rwest I'm looking though your grep imports. All imports were changed to the full import path except for the following collections and copy because those are pretty ubiquitous.

Also, I did an interactive rebase so it looks neater. Feel free to take another look at it

[nateharms]

one last push... I missed a few RMGDatabase imports...

[nateharms]

@rwest @davidfarinajr any more comments? Otherwise can we merge this in?