ReactionMechanismGenerator / RMG-Py

Python version of the amazing Reaction Mechanism Generator (RMG).
http://reactionmechanismgenerator.github.io/RMG-Py/
Other
387 stars 227 forks source link

The function of log files used in CanTherm / Arkane #1514

Closed pez16103 closed 5 years ago

pez16103 commented 5 years ago

Topic

General area which your question is related to.

Context

A clear and concise description what you're trying to do.

Currently, I start to learn to use canTherm through examples in the source code. Is the log file used for energy/geometry/frequencies as input or output file? If it is input, how to generate it?

Question

Write your question here.

Installation Information

Describe your installation method and system information if applicable.

alongd commented 5 years ago

These log files are provided by the user (hence in this context, they are "input files"). They are generated by running an electronic structure software on your molecule of interest (e.g., Gaussian, QChem, or Molpro). This is referred to in our documentation as quantum chemistry output file. See the relevant part of the documentation here: http://reactionmechanismgenerator.github.io/RMG-Py/users/arkane/input.html#option-1-automatically-parse-quantum-chemistry-calculation-output

(Note that starting from version 2.2.2. Cantherm will be renamed as Arkane, hence the documentation refers to it as Arkane as well)

pez16103 commented 5 years ago

Thank you very much! Could you provide some theory tutorial for Arkane? I will very appreciate it.

alongd commented 5 years ago

Sure. On the RMG website (https://rmg.mit.edu/) click Documentation, then Theory Guide. Then, the Pressure-Dependence Theory Guide might be relevant. Also, on the RMG website, you could click on Resources and see various presentations on CanTherm and pressure-dependent calculations, among other subjects.