mjohnson541
commented
4 months ago I finally managed to reproduce this locally and it gives a bounds error message that seems to get ignored:
Internal error: encountered unexpected error in runtime:
BoundsError(a=Array{Int64, (272,)}[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4], i=(-9223372036854775615,))
ijl_bounds_error_ints at /Applications/Julia-1.8.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.8.dylib (unknown line)
getindex at ./array.jl:924 [inlined]
renumber_ir_elements! at ./compiler/optimize.jl:866
convert_to_ircode at ./compiler/optimize.jl:609
run_passes at ./compiler/optimize.jl:535
optimize at ./compiler/optimize.jl:504 [inlined]
_typeinf at ./compiler/typeinfer.jl:257
typeinf at ./compiler/typeinfer.jl:213
typeinf_edge at ./compiler/typeinfer.jl:877
abstract_call_method at ./compiler/abstractinterpretation.jl:647
abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:139
abstract_call_known at ./compiler/abstractinterpretation.jl:1716
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_apply at ./compiler/abstractinterpretation.jl:1357
abstract_call_known at ./compiler/abstractinterpretation.jl:1620
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_call at ./compiler/abstractinterpretation.jl:1753
abstract_eval_statement at ./compiler/abstractinterpretation.jl:1910
typeinf_local at ./compiler/abstractinterpretation.jl:2386
typeinf_nocycle at ./compiler/abstractinterpretation.jl:2482
_typeinf at ./compiler/typeinfer.jl:230
typeinf at ./compiler/typeinfer.jl:213
typeinf_edge at ./compiler/typeinfer.jl:877
abstract_call_method at ./compiler/abstractinterpretation.jl:647
abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:139
abstract_call_known at ./compiler/abstractinterpretation.jl:1716
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_call at ./compiler/abstractinterpretation.jl:1753
abstract_eval_statement at ./compiler/abstractinterpretation.jl:1910
typeinf_local at ./compiler/abstractinterpretation.jl:2386
typeinf_nocycle at ./compiler/abstractinterpretation.jl:2482
_typeinf at ./compiler/typeinfer.jl:230
typeinf at ./compiler/typeinfer.jl:213
typeinf_edge at ./compiler/typeinfer.jl:877
abstract_call_method at ./compiler/abstractinterpretation.jl:647
abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:139
abstract_call_known at ./compiler/abstractinterpretation.jl:1716
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_call at ./compiler/abstractinterpretation.jl:1753
abstract_eval_statement at ./compiler/abstractinterpretation.jl:1910
typeinf_local at ./compiler/abstractinterpretation.jl:2386
typeinf_nocycle at ./compiler/abstractinterpretation.jl:2482
_typeinf at ./compiler/typeinfer.jl:230
typeinf at ./compiler/typeinfer.jl:213
typeinf_edge at ./compiler/typeinfer.jl:877
abstract_call_method at ./compiler/abstractinterpretation.jl:647
abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:139
abstract_call_known at ./compiler/abstractinterpretation.jl:1716
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_apply at ./compiler/abstractinterpretation.jl:1357
abstract_call_known at ./compiler/abstractinterpretation.jl:1620
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_call at ./compiler/abstractinterpretation.jl:1753
abstract_eval_statement at ./compiler/abstractinterpretation.jl:1910
typeinf_local at ./compiler/abstractinterpretation.jl:2386
typeinf_nocycle at ./compiler/abstractinterpretation.jl:2482
_typeinf at ./compiler/typeinfer.jl:230
typeinf at ./compiler/typeinfer.jl:213
typeinf_edge at ./compiler/typeinfer.jl:877
abstract_call_method at ./compiler/abstractinterpretation.jl:647
abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:139
abstract_call_known at ./compiler/abstractinterpretation.jl:1716
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_call at ./compiler/abstractinterpretation.jl:1753
abstract_eval_statement at ./compiler/abstractinterpretation.jl:1910
typeinf_local at ./compiler/abstractinterpretation.jl:2386
typeinf_nocycle at ./compiler/abstractinterpretation.jl:2482
_typeinf at ./compiler/typeinfer.jl:230
typeinf at ./compiler/typeinfer.jl:213
typeinf_edge at ./compiler/typeinfer.jl:877
abstract_call_method at ./compiler/abstractinterpretation.jl:647
abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:139
abstract_call_known at ./compiler/abstractinterpretation.jl:1716
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_apply at ./compiler/abstractinterpretation.jl:1357
abstract_call_known at ./compiler/abstractinterpretation.jl:1620
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_call at ./compiler/abstractinterpretation.jl:1753
abstract_eval_statement at ./compiler/abstractinterpretation.jl:1910
typeinf_local at ./compiler/abstractinterpretation.jl:2386
typeinf_nocycle at ./compiler/abstractinterpretation.jl:2482
_typeinf at ./compiler/typeinfer.jl:230
typeinf at ./compiler/typeinfer.jl:213
typeinf_edge at ./compiler/typeinfer.jl:877
abstract_call_method at ./compiler/abstractinterpretation.jl:647
abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:139
abstract_call_known at ./compiler/abstractinterpretation.jl:1716
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_apply at ./compiler/abstractinterpretation.jl:1357
abstract_call_known at ./compiler/abstractinterpretation.jl:1620
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_call at ./compiler/abstractinterpretation.jl:1753
abstract_eval_statement at ./compiler/abstractinterpretation.jl:1910
typeinf_local at ./compiler/abstractinterpretation.jl:2386
typeinf_nocycle at ./compiler/abstractinterpretation.jl:2482
_typeinf at ./compiler/typeinfer.jl:230
typeinf at ./compiler/typeinfer.jl:213
typeinf_edge at ./compiler/typeinfer.jl:877
abstract_call_method at ./compiler/abstractinterpretation.jl:647
abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:139
abstract_call_known at ./compiler/abstractinterpretation.jl:1716
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_apply at ./compiler/abstractinterpretation.jl:1357
abstract_call_known at ./compiler/abstractinterpretation.jl:1620
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_call at ./compiler/abstractinterpretation.jl:1753
abstract_eval_statement at ./compiler/abstractinterpretation.jl:1910
typeinf_local at ./compiler/abstractinterpretation.jl:2386
typeinf_nocycle at ./compiler/abstractinterpretation.jl:2482
_typeinf at ./compiler/typeinfer.jl:230
typeinf at ./compiler/typeinfer.jl:213
typeinf_edge at ./compiler/typeinfer.jl:877
abstract_call_method at ./compiler/abstractinterpretation.jl:647
abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:139
abstract_call_known at ./compiler/abstractinterpretation.jl:1716
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_apply at ./compiler/abstractinterpretation.jl:1357
abstract_call_known at ./compiler/abstractinterpretation.jl:1620
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_call at ./compiler/abstractinterpretation.jl:1753
abstract_eval_statement at ./compiler/abstractinterpretation.jl:1910
typeinf_local at ./compiler/abstractinterpretation.jl:2386
typeinf_nocycle at ./compiler/abstractinterpretation.jl:2482
_typeinf at ./compiler/typeinfer.jl:230
typeinf at ./compiler/typeinfer.jl:213
typeinf_edge at ./compiler/typeinfer.jl:877
abstract_call_method at ./compiler/abstractinterpretation.jl:647
abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:139
abstract_call_known at ./compiler/abstractinterpretation.jl:1716
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_call at ./compiler/abstractinterpretation.jl:1753
abstract_eval_statement at ./compiler/abstractinterpretation.jl:1910
typeinf_local at ./compiler/abstractinterpretation.jl:2386
typeinf_nocycle at ./compiler/abstractinterpretation.jl:2482
_typeinf at ./compiler/typeinfer.jl:230
typeinf at ./compiler/typeinfer.jl:213
typeinf_edge at ./compiler/typeinfer.jl:877
abstract_call_method at ./compiler/abstractinterpretation.jl:647
abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:139
abstract_call_known at ./compiler/abstractinterpretation.jl:1716
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_call at ./compiler/abstractinterpretation.jl:1753
abstract_eval_statement at ./compiler/abstractinterpretation.jl:1910
typeinf_local at ./compiler/abstractinterpretation.jl:2386
typeinf_nocycle at ./compiler/abstractinterpretation.jl:2482
_typeinf at ./compiler/typeinfer.jl:230
typeinf at ./compiler/typeinfer.jl:213
typeinf_edge at ./compiler/typeinfer.jl:877
abstract_call_method at ./compiler/abstractinterpretation.jl:647
abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:139
abstract_call_known at ./compiler/abstractinterpretation.jl:1716
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_apply at ./compiler/abstractinterpretation.jl:1357
abstract_call_known at ./compiler/abstractinterpretation.jl:1620
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_call at ./compiler/abstractinterpretation.jl:1753
abstract_eval_statement at ./compiler/abstractinterpretation.jl:1910
typeinf_local at ./compiler/abstractinterpretation.jl:2386
typeinf_nocycle at ./compiler/abstractinterpretation.jl:2482
_typeinf at ./compiler/typeinfer.jl:230
typeinf at ./compiler/typeinfer.jl:213
typeinf_edge at ./compiler/typeinfer.jl:877
abstract_call_method at ./compiler/abstractinterpretation.jl:647
abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:139
abstract_call_known at ./compiler/abstractinterpretation.jl:1716
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_call at ./compiler/abstractinterpretation.jl:1753
abstract_eval_statement at ./compiler/abstractinterpretation.jl:1910
typeinf_local at ./compiler/abstractinterpretation.jl:2386
typeinf_nocycle at ./compiler/abstractinterpretation.jl:2482
_typeinf at ./compiler/typeinfer.jl:230
typeinf at ./compiler/typeinfer.jl:213
typeinf_edge at ./compiler/typeinfer.jl:877
abstract_call_method at ./compiler/abstractinterpretation.jl:647
abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:139
abstract_call_known at ./compiler/abstractinterpretation.jl:1716
abstract_call at ./compiler/abstractinterpretation.jl:1786
abstract_call at ./compiler/abstractinterpretation.jl:1753
abstract_eval_statement at ./compiler/abstractinterpretation.jl:1910
typeinf_local at ./compiler/abstractinterpretation.jl:2386
typeinf_nocycle at ./compiler/abstractinterpretation.jl:2482
_typeinf at ./compiler/typeinfer.jl:230
typeinf at ./compiler/typeinfer.jl:213
typeinf_ext at ./compiler/typeinfer.jl:967
typeinf_ext_toplevel at ./compiler/typeinfer.jl:1000
typeinf_ext_toplevel at ./compiler/typeinfer.jl:996
jfptr_typeinf_ext_toplevel_15369.clone_1 at /Applications/Julia-1.8.app/Contents/Resources/julia/lib/julia/sys.dylib (unknown line)
ijl_apply_generic at /Applications/Julia-1.8.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.8.dylib (unknown line)
jl_type_infer at /Applications/Julia-1.8.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.8.dylib (unknown line)
jl_generate_fptr_impl at /Applications/Julia-1.8.app/Contents/Resources/julia/lib/julia/libjulia-codegen.1.8.dylib (unknown line)
jl_compile_method_internal at /Applications/Julia-1.8.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.8.dylib (unknown line)
ijl_apply_generic at /Applications/Julia-1.8.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.8.dylib (unknown line)
do_call at /Applications/Julia-1.8.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.8.dylib (unknown line)
eval_body at /Applications/Julia-1.8.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.8.dylib (unknown line)
jl_interpret_toplevel_thunk at /Applications/Julia-1.8.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.8.dylib (unknown line)
top-level scope at In[18]:2
jl_toplevel_eval_flex at /Applications/Julia-1.8.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.8.dylib (unknown line)
jl_toplevel_eval_flex at /Applications/Julia-1.8.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.8.dylib (unknown line)
ijl_toplevel_eval_in at /Applications/Julia-1.8.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.8.dylib (unknown line)
eval at ./boot.jl:368 [inlined]
include_string at ./loading.jl:1428
softscope_include_string at /Users/mattjohnson/anaconda3/envs/rmg_env/share/julia/packages/SoftGlobalScope/u4UzH/src/SoftGlobalScope.jl:65
ijl_apply_generic at /Applications/Julia-1.8.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.8.dylib (unknown line)
execute_request at /Users/mattjohnson/anaconda3/envs/rmg_env/share/julia/packages/IJulia/Vo51o/src/execute_request.jl:67
unknown function (ip: 0x1d2ca8596)
ijl_apply_generic at /Applications/Julia-1.8.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.8.dylib (unknown line)
jl_f__call_latest at /Applications/Julia-1.8.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.8.dylib (unknown line)
#invokelatest#2 at ./essentials.jl:729 [inlined]
invokelatest at ./essentials.jl:726 [inlined]
eventloop at /Users/mattjohnson/anaconda3/envs/rmg_env/share/julia/packages/IJulia/Vo51o/src/eventloop.jl:8
#15 at ./task.jl:484
unknown function (ip: 0x118fcf71f)
ijl_apply_generic at /Applications/Julia-1.8.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.8.dylib (unknown line)
start_task at /Applications/Julia-1.8.app/Contents/Resources/julia/lib/julia/libjulia-internal.1.8.dylib (unknown line)
[CVODES WARNING] CVode
Internal t = 150.111 and h = -3.36301e-16 are such that t + h = t on the next step. The solver will continue anyway.
1×29 adjoint(::Vector{Float64}) with eltype Float64:
0.0 0.0 0.0 0.0 -1.07658e-24 -3.41635e-25 … 8.87347e-37 -1.54751e-33Looks mostly like an internal julia error although it could still be something in SciMLSensitivities. Could possibly by fixed by changing julia version away from v1.8.5.
In recent main builds adjoint sensitivity analysis seems to give incorrect values compared to forward sensitivity methods as a result of upstream changes. #233