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RegulatoryGenomicsGroup / chicdiff

A differential caller for capture Hi-C data
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Can not dowload chicdiff #16

Open FN2023 opened 1 year ago

FN2023 commented 1 year ago

library("Chicdiff") Error in library("Chicdiff") : ‘Chicdiff’ is not a valid installed package

sessionInfo() R version 4.2.2 (2022-10-31) Platform: x86_64-pc-linux-gnu (64-bit) Running under: CentOS Linux 7 (Core)

Matrix products: default BLAS/LAPACK: /scicore/soft/apps/FlexiBLAS/3.0.4-GCC-10.3.0/lib64/libflexiblas.so.3.0

locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8
[4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages: [1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached): [1] ps_1.7.1 prettyunits_1.1.1 crayon_1.5.1 R6_2.5.1 lifecycle_1.0.3
[6] magrittr_2.0.3 rlang_1.0.6 cachem_1.0.6 cli_3.6.0 remotes_2.4.2
[11] rstudioapi_0.13 fs_1.5.2 callr_3.7.3 ellipsis_0.3.2 devtools_2.4.3
[16] tools_4.2.2 glue_1.6.2 purrr_0.3.4 pkgload_1.3.2 fastmap_1.1.0
[21] compiler_4.2.2 processx_3.8.0 pkgbuild_1.3.1 sessioninfo_1.2.2 memoise_2.0.1
[26] usethis_2.1.6

mspivakov commented 1 year ago

please download from GitHub using library remotes or devtools.

On Tue, 21 Feb 2023, 11:33 FN2023, @.***> wrote:

library("Chicdiff") Error in library("Chicdiff") : ‘Chicdiff’ is not a valid installed package

sessionInfo() R version 4.2.2 (2022-10-31) Platform: x86_64-pc-linux-gnu (64-bit) Running under: CentOS Linux 7 (Core)

Matrix products: default BLAS/LAPACK: /scicore/soft/apps/FlexiBLAS/3.0.4-GCC-10.3.0/lib64/libflexiblas.so.3.0

locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 [4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C [10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages: [1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached): [1] ps_1.7.1 prettyunits_1.1.1 crayon_1.5.1 R6_2.5.1 lifecycle_1.0.3 [6] magrittr_2.0.3 rlang_1.0.6 cachem_1.0.6 cli_3.6.0 remotes_2.4.2 [11] rstudioapi_0.13 fs_1.5.2 callr_3.7.3 ellipsis_0.3.2 devtools_2.4.3 [16] tools_4.2.2 glue_1.6.2 purrr_0.3.4 pkgload_1.3.2 fastmap_1.1.0 [21] compiler_4.2.2 processx_3.8.0 pkgbuild_1.3.1 sessioninfo_1.2.2 memoise_2.0.1 [26] usethis_2.1.6

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FN2023 commented 1 year ago

I have downloaded it as git clone https://github.com/FunctionalGeneControl/chicdiff.git

I have also tried

library(devtools) Loading required package: usethis install_github("RegulatoryGenomicsGroup/chicdiff", subdir="Chicdiff") Error: Failed to install 'unknown package' from GitHub: Failed to connect to api.github.com port 443: No route to host

FN2023 commented 1 year ago

remotes::install_github("RegulatoryGenomicsGroup/chicdiff", subdir="Chicdiff") Error: Failed to install 'unknown package' from GitHub: Failed to connect to api.github.com port 443: No route to host

mspivakov commented 1 year ago

try downloading it from GitHub manually and then installing locally.

On Tue, 21 Feb 2023, 11:50 FN2023, @.***> wrote:

I have downloaded it as git clone https://github.com/FunctionalGeneControl/chicdiff.git

I have also tried

library(devtools) Loading required package: usethis install_github("RegulatoryGenomicsGroup/chicdiff", subdir="Chicdiff") Error: Failed to install 'unknown package' from GitHub: Failed to connect to api.github.com port 443: No route to host

— Reply to this email directly, view it on GitHub https://github.com/RegulatoryGenomicsGroup/chicdiff/issues/16#issuecomment-1438344716, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAMVB23D4T7JGSPJGDH3YHDWYSTYJANCNFSM6AAAAAAVC5XX7Y . You are receiving this because you commented.Message ID: @.***>

FN2023 commented 1 year ago

i have downloaded "chicdiff" manually from this site https://github.com/RegulatoryGenomicsGroup/chicdiff/tree/develop. There is a green button . I used download zip. It was downloaded on my local computer. There i found sub-directory "Chicdiff". Then that directory I uploaded from my local computer into my R library folder.

library(Chicdiff) Error in library(Chicdiff) : ‘Chicdiff’ is not a valid installed package

mspivakov commented 1 year ago

you still need to install it - please have a look for how to install packages from local.

On Tue, 21 Feb 2023, 13:38 FN2023, @.***> wrote:

i have downloaded "chicdiff" manually from this site https://github.com/RegulatoryGenomicsGroup/chicdiff/tree/develop. There is a green button . I used download zip. It was downloaded on my local computer. There i found sub-directory "Chicdiff". Then that directory I uploaded from my local computer into my R library folder.

library(Chicdiff) Error in library(Chicdiff) : ‘Chicdiff’ is not a valid installed package

— Reply to this email directly, view it on GitHub https://github.com/RegulatoryGenomicsGroup/chicdiff/issues/16#issuecomment-1438507055, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAMVB26GHLT2QIXNANNG65LWYTAMFANCNFSM6AAAAAAVC5XX7Y . You are receiving this because you commented.Message ID: @.***>