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RemiAllio / MitoFinder

MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
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Is it normal that tmp.gb file only shows the last reference we use? #10

Closed Menglinhsy closed 4 years ago

Menglinhsy commented 4 years ago

Hi, Remi,

Mitofinder runs well on our data! It is great and thanks a lot!

I have a small question that we used several mitochondrial genomes as the references, but it only shows the last one in tmp.gb file. Is it normal?

Best, Menglin

RemiAllio commented 4 years ago

Hi Menglin,

Thank you for your comment. I'm really glad that MitoFinder could help you in your research.

It's is perfectly normal that you find only the last reference in the tmp.gb file. This file allows MitoFinder to extract (in another file) the genes of each reference one by one. So during the process, all reference are written in the tmp file and then replaced by the following one. At the end, the last reference is not replaced and then remains in the file.

So don't worry, MitoFinder uses all the references to find the mitogenome and then chooses the best reference to annotate each gene of your species.

Cheers, Rémi

RemiAllio commented 4 years ago

Hi Menglin,

Thank you for your comment. I'm really glad that MitoFinder could help you in your research.

It's is perfectly normal that you find only the last reference in the tmp.gb file. This file allows MitoFinder to extract (in another file) the genes of each reference one by one. So during the process, all reference are written in the tmp file and then replaced by the following one. At the end, the last reference is not replaced and then remains in the file.

So don't worry, MitoFinder uses all the references to find the mitogenome and then chooses the best reference to annotate each gene of your species.

Cheers, Rémi

RemiAllio commented 4 years ago

Hi Menglin,

Thank you for your comment. I'm really glad that MitoFinder could help you in your research.

It's is perfectly normal that you find only the last reference in the tmp.gb file. This file allows MitoFinder to extract (in another file) the genes of each reference one by one. So during the process, all reference are written in the tmp file and then replaced by the following one. At the end, the last reference is not replaced and then remains in the file.

So don't worry, MitoFinder uses all the references to find the mitogenome and then chooses the best reference to annotate each gene of your species.

Cheers, Rémi

RemiAllio commented 4 years ago

Hi Menglin,

Thank you for your comment. I'm really glad that MitoFinder could help you in your research.

It's is perfectly normal that you find only the last reference in the tmp.gb file. This file allows MitoFinder to extract (in another file) the genes of each reference one by one. So during the process, all reference are written in the tmp file and then replaced by the following one. At the end, the last reference is not replaced and then remains in the file.

So don't worry, MitoFinder uses all the references to find the mitogenome and then chooses the best reference to annotate each gene of your species.

Cheers, Rémi

RemiAllio commented 4 years ago

Hi Menglin,

Thank you for your comment. I'm really glad that MitoFinder could help you in your research.

It's is perfectly normal that you find only the last reference in the tmp.gb file. This file allows MitoFinder to extract (in another file) the genes of each reference one by one. So during the process, all reference are written in the tmp file and then replaced by the following one. At the end, the last reference is not replaced and then remains in the file.

So don't worry, MitoFinder uses all the references to find the mitogenome and then chooses the best reference to annotate each gene of your species.

Cheers, Rémi

RemiAllio commented 4 years ago

Hi Menglin,

Thank you for your comment. I'm really glad that MitoFinder could help you in your research.

It's is perfectly normal that you find only the last reference in the tmp.gb file. This file allows MitoFinder to extract (in another file) the genes of each reference one by one. So during the process, all reference are written in the tmp file and then replaced by the following one. At the end, the last reference is not replaced and then remains in the file.

So don't worry, MitoFinder uses all the references to find the mitogenome and then chooses the best reference to annotate each gene of your species.

Cheers, Rémi