Unprivileged user installation of dependencies.

RemiAllio / MitoFinder

MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data

86 stars 14 forks source link

Closed roguephysicist closed 3 years ago

roguephysicist commented 3 years ago

Hi,

I am trying to install MitoFinder on a shared HPC system. Unfortunately, the following make install step from install.sh:

cd "$wd"/trnascanSE
tar -xvf infernal-1.1.3.tar.gz
cd infernal-1.1.3
./configure
make
make install

fails because the --prefix is not set to anything, thus defaulting to /usr/local. What should the correct prefix be?

Thanks.

RemiAllio commented 3 years ago

Hi,

Thank you for contacting me.

Could you try to specify --prefix=$(pwd)/exe in the install.sh file? Please, let me know if it works,

Cheers, Rémi

roguephysicist commented 3 years ago

Seems like it works. Thanks!