RemiAllio
commented
2 years ago Hello,
Could you tell me which version of python are you using? It needs to be python 2.7.
Maybe you should install singularity as recommended in the readme and use the MitoFinder container. This is the easiest way to install and run MitoFinder.
Tell me if this helps, Best regards, Rémi
qingjiaowohlj
Hello, sorry to disturb you, I install mitofinder following your README. but after I add the PATH, it still has such error:
peng@peng-System-Product-Name:~/mitofinder/MitoFinder$ mitofinder -v File "/home/peng/mitofinder/MitoFinder/mitofinder", line 148 print "\n # For trimmed paired-end reads:\nmitofinder --megahit -j [seqid] \\n\t-1 [left_reads.fastq.gz] \\n\t-2 [right_reads.fastq.gz] \\n\t-r [genbank_reference.gb] \\n\t-o [genetic_code] \\n\t-p [threads] \\n\t-m [memory]\n\n # For trimmed single-end reads:\nmitofinder --megahit -j [seqid] \\n\t-s [SE_reads.fastq.gz] \\n\t-r [genbank_reference.gb] \\n\t-o [genetic_code] \\n\t-p [threads] \\n\t-m [memory]\n\n # For one assembly (one or more contig(s))\nmitofinder -j [seqid] \\n\t-a [assembly.fasta] \\n\t-r [genbank_reference.gb] \\n\t-o [genetic_code] \\n\t-p [threads] \\n\t-m [memory]\n" ^ SyntaxError: invalid syntax
It's the first installation.