RemiAllio / MitoFinder

MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
86 stars 14 forks source link

MitoFinder not installing in mac. Kindly help! #46

Open avvypaks opened 1 year ago

avvypaks commented 1 year ago

configure: Configuring Infernal for your system. checking build system type... configure: error: /bin/sh ./config.sub -apple-darwin22.3.0 failed configure: WARNING: cache variable ac_cv_build contains a newline make: No targets specified and no makefile found. Stop. make: No rule to make target `install'. Stop.

RemiAllio commented 1 year ago

Hi,

Installing MitoFinder is not easy on Mac and I am not a specialist of Mac OS unfortunately...

But before we dig into the problem, please could you confirm that you have followed the installation process for Mac proposed in the readme here?

Thank you and sorry for the inconvenience, Best, Rémi

RemiAllio commented 1 year ago

Alternatively, you can install singularity on your Mac and use the singularity image of MitoFinder that comes with all dependencies. Here is how to use singularity on Mac. I've never tried but it seems pretty easy.

Hope it helps, Best, Rémi

avvypaks commented 1 year ago

Thank you for the response.

I have followed the installation process as it is. And unfortunately, singularity is also not compatible in the new M1 macs. The code works in the intel chip ones. I have found their solution here:

https://github.com/manuparra/singularitycontainers-on-m1-arm64

I will try this and let you know. It will be great if we can find MitoFinder in conda! Thanks.

RemiAllio commented 1 year ago

Thank you for your response. The problem with the installation of MitoFinder may also come from incompatibilities with the new M1.

Please let me know if it works for you using this specific Singularity version. And yes it would be great to have MitoFinder in conda, I still need to work on this...

Best, Rémi

woojunbang commented 1 year ago

Hello. I have a same problem here. Is there any solutions to install properly in Mac, not by singularity Thank you