search

RemiAllio / MitoFinder

MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
86 stars 14 forks source link

python while running #52

Closed stachyris closed 8 months ago

stachyris commented 9 months ago

Hi. I am trying to run the MitoFinder but I am encountereing following error : -bash: /home/vkl1/softs/MitoFinder/mitofinder: /usr/bin/python: bad interpreter: No such file or directory

I am not sure where the issue is coming from - python3 is installed in /usr/bin/ but python in my $PATH is ~/miniconda/bin/python.

Could you help me with this? thank you.

Best, Vinay

RemiAllio commented 9 months ago

Hi!

MitoFinder is coded in python2.7. If you have python2.7 installed, you can run MitoFinder as follows:

python2.7 /home/vkl1/softs/MitoFinder/mitofinder

Otherwise, I would recommend to use MitoFinder singularity container.

Let me know if it helps! Best, Rémi

djawdjjalodkpsaodkpw commented 9 months ago

Hi!

MitoFinder is coded in python2.7. If you have python2.7 installed, you can run MitoFinder as follows:

python2.7 /home/vkl1/softs/MitoFinder/mitofinder

Otherwise, I would recommend to use MitoFinder singularity container.

stachyris commented 9 months ago

Thanks @RemiAllio ! I used the container with singularity. It worked. Thanks!

Also, there seems to be some kind of "spam" account commenting? FYI.

Best, Vinay