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ReproNim / containers

Containers "distribution" for reproducible neuroimaging
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issue with fmriprep v21.0.0 image #65

Closed jbwexler closed 2 years ago

jbwexler commented 2 years ago

The image is only 2.2GB whereas it should be 5.1GB. And it gives the following error when run: "/.singularity.d/runscript: 3: exec: /opt/conda/bin/fmriprep: Exec format error"

I don't think it's an issue with fmriprep as the image works fine when downloaded this way: singularity build fmriprep-21.0.0.simg docker://nipreps/fmriprep:21.0.0

djarecka commented 2 years ago

have the same error

yarikoptic commented 2 years ago

Thank you! I will have a look tomorrow - something should've gone wrong I guess

yarikoptic commented 2 years ago

Thank you @jbwexler for alerting and @djarecka for confirming the issue. Update dataset and try again now.

The reason was -- the partition docker uses for its .cache got filled up by it! That lead singularity (still using 2.6 there) to start puking all kinds of errors but script itself proceeded as nothing bad happened. Unfortunately in a rush to address the issue I just removed the cache so didn't drill down to fix situation so it would not manifest in the future. Filed a dedicated https://github.com/ReproNim/containers/issues/66 for that, and since AFAIK fmriprep image is fixed, will close this one.