(git)smaug:~/proj/dandi/containers/pynwb-mpi[master]git
$> docker build .
Sending build context to Docker daemon 378.6MB
Step 1/13 : FROM debian:testing
---> ff31e2a6ba82
Step 2/13 : ARG DEBIAN_FRONTEND="noninteractive"
---> Using cache
---> 700559af0ec6
Step 3/13 : ENV LC_ALL "en_US.UTF-8" ND_ENTRYPOINT "/neurodocker/startup.sh" LANG "en_US.UTF-8"
---> Using cache
---> 2eca71f4f489
Step 4/13 : RUN export ND_ENTRYPOINT="/neurodocker/startup.sh" && apt-get update -qq && apt-get install -y -q --no-install-recommends apt-utils bzip2 ca-certificates curl locales unzip && apt-get clean && rm -rf /var/lib/apt/lists/* && sed -i -e 's/# en_US.UTF-8 UTF-8/en_US.UTF-8 UTF-8/' /etc/locale.gen && dpkg-reconfigure --frontend=noninteractive locales && update-locale LANG="en_US.UTF-8" && chmod 777 /opt && chmod a+s /opt && mkdir -p /neurodocker && if [ ! -f "$ND_ENTRYPOINT" ]; then echo '#!/usr/bin/env bash' >> "$ND_ENTRYPOINT" && echo 'set -e' >> "$ND_ENTRYPOINT" && echo 'export USER="${USER:=`whoami`}"' >> "$ND_ENTRYPOINT" && echo 'if [ -n "$1" ]; then "$@"; else /usr/bin/env bash; fi' >> "$ND_ENTRYPOINT"; fi && chmod -R 777 /neurodocker && chmod a+s /neurodocker
---> Running in 91e9ee032b56
W: GPG error: http://httpredir.debian.org testing InRelease: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 04EE7237B7D453EC NO_PUBKEY 648ACFD622F3D138
W: GPG error: http://httpredir.debian.org testing-updates InRelease: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 04EE7237B7D453EC NO_PUBKEY 648ACFD622F3D138
W: Failed to fetch http://security.debian.org/dists/testing/updates/main/binary-amd64/Packages 404 Not Found
E: Some index files failed to download. They have been ignored, or old ones used instead.
The command '/bin/sh -c export ND_ENTRYPOINT="/neurodocker/startup.sh" && apt-get update -qq && apt-get install -y -q --no-install-recommends apt-utils bzip2 ca-certificates curl locales unzip && apt-get clean && rm -rf /var/lib/apt/lists/* && sed -i -e 's/# en_US.UTF-8 UTF-8/en_US.UTF-8 UTF-8/' /etc/locale.gen && dpkg-reconfigure --frontend=noninteractive locales && update-locale LANG="en_US.UTF-8" && chmod 777 /opt && chmod a+s /opt && mkdir -p /neurodocker && if [ ! -f "$ND_ENTRYPOINT" ]; then echo '#!/usr/bin/env bash' >> "$ND_ENTRYPOINT" && echo 'set -e' >> "$ND_ENTRYPOINT" && echo 'export USER="${USER:=`whoami`}"' >> "$ND_ENTRYPOINT" && echo 'if [ -n "$1" ]; then "$@"; else /usr/bin/env bash; fi' >> "$ND_ENTRYPOINT"; fi && chmod -R 777 /neurodocker && chmod a+s /neurodocker' returned a non-zero code: 100
apparently from looking at http://security-cdn.debian.org/dists/ for testing it should be not just testing but testing-security - so that might be the catch.
neurodocker has nothing to do with setting up those apt sources. it was outdated debian:testing image. not sure how things worked for us "interactively"
we used debian testing in docker shortly before interactively and things worked fine. Now trying to build image using neurodocker
full script
```shell $> cat generate_container.sh #!/bin/bash set -eu generate() { #docker run --rm kaczmarj/neurodocker generate "$1" \ neurodocker generate "$1" \ --base=debian:testing \ --pkg-manager=apt \ --install python3-h5py python3-pip hdf5-tools \ --run "mkdir -p /opt/mpidemos" \ --copy test*.py /opt/mpidemos \ --run "chmod a+rX -R /opt/mpidemos" \ --run "python3 -m pip install pynwb" \ --user=nwb } generate docker > Dockerfile generate singularity > Singularity ```but build of docker image (only) fails with
apparently from looking at http://security-cdn.debian.org/dists/ for
testing
it should be not justtesting
buttesting-security
- so that might be the catch.