I have tried to rerun but even removing remotes etc in the dataset but it didn't help
only then I realized that in
…nim/reproman-master/docs/usecases/bids-fmriprep-workflow-NP/out > reproman run --follow -r "${RM_RESOURCE}" --sub "${RM_SUB}" --orc "${RM_ORC}" --jp container=containers/bids-mriqc data/bids data/mriqc participant,group
2019-07-24 15:05:27,464 [INFO ] No root directory supplied for smaug; using '/home/yoh/.reproman/run-root'
[INFO ] Connecting ...
ECDSA host key for IP address '129.170.233.9' not in list of known hosts.
[INFO ] Considering to create a target dataset /home/yoh/proj/repronim/reproman-master/docs/usecases/bids-fmriprep-workflow-NP/out at /home/yoh/.reproman/run-root/1ab254ca-ad49-11e9-95c1-8019340ce7f2 of smaug
[INFO ] Fetching updates for <Dataset path=/home/yoh/proj/repronim/reproman-master/docs/usecases/bids-fmriprep-workflow-NP/out>
.: smaug(+) [ssh://smaug/home/yoh/.reproman/run-root/1ab254ca-ad49-11e9-95c1-8019340ce7f2 (git)]
[INFO ] Adjusting remote git configuration
[INFO ] Running post-update hooks in all created siblings
2019-07-24 15:05:32,319 [ERROR ] Command did not complete successfully [{'action': 'create_sibling', 'type': 'dataset', 'status': 'error', 'gitshasum': '8a0ef936dd4195cef2b81e2c3eb305594e154733', 'path': '/home/yoh/proj/repronim/reproman-master/docs/usecases/bids-fmriprep-workflow-NP/out/containers', 'revision': '8a0ef936dd4195cef2b81e2c3eb305594e154733', 'gitmodule_url': 'http://datasets.datalad.org/repronim/containers/.git', 'gitmodule_datalad-id': 'b02e63c2-62c1-11e9-82b0-52540040489c', 'gitmodule_name': 'containers', 'parentds': '/home/yoh/proj/repronim/reproman-master/docs/usecases/bids-fmriprep-workflow-NP/out', 'refds': '/home/yoh/proj/repronim/reproman-master/docs/usecases/bids-fmriprep-workflow-NP/out', 'registered_subds': True, 'message': ("sibling '%s' already configured (specify alternative name, or force reconfiguration via --existing", 'smaug')}, {'action': 'create_sibling', 'type': 'dataset', 'status': 'error', 'gitshasum': '12e1aeceaca008645da36a67c026537932caeaee', 'path': '/home/yoh/proj/repronim/reproman-master/docs/usecases/bids-fmriprep-workflow-NP/out/data/bids', 'revision': '12e1aeceaca008645da36a67c026537932caeaee', 'gitmodule_url': 'https://github.com/ReproNim/ds000003-demo', 'gitmodule_datalad-id': '9040fae2-8704-11e8-aff3-0242ac12000c', 'gitmodule_name': 'data/bids', 'parentds': '/home/yoh/proj/repronim/reproman-master/docs/usecases/bids-fmriprep-workflow-NP/out', 'refds': '/home/yoh/proj/repronim/reproman-master/docs/usecases/bids-fmriprep-workflow-NP/out', 'registered_subds': True, 'message': ("sibling '%s' already configured (specify alternative name, or force reconfiguration via --existing", 'smaug')}, {'action': 'create_sibling', 'type': 'dataset', 'status': 'error', 'gitshasum': 'de0cb795b5e9457f8d8d2c73b89df7ec77042d8e', 'path': '/home/yoh/proj/repronim/reproman-master/docs/usecases/bids-fmriprep-workflow-NP/out/data/mriqc', 'revision': 'de0cb795b5e9457f8d8d2c73b89df7ec77042d8e', 'gitmodule_url': './data/mriqc', 'gitmodule_datalad-id': '214aaff8-ad49-11e9-95c1-8019340ce7f2', 'gitmodule_name': 'data/mriqc', 'parentds': '/home/yoh/proj/repronim/reproman-master/docs/usecases/bids-fmriprep-workflow-NP/out', 'refds': '/home/yoh/proj/repronim/reproman-master/docs/usecases/bids-fmriprep-workflow-NP/out', 'registered_subds': True, 'message': ("sibling '%s' already configured (specify alternative name, or force reconfiguration via --existing", 'smaug')}] [utils.py:generator_func:467] (IncompleteResultsError)
it was actually complaining about ./containers subdataset (not this superdataset) already having a smaug remote.
I think that ideally
it should not even complain/crash if remote is configured and has desired target path (I believe it is the fact here)
if path is different and remote MUST be reconfigured, then there should just be some way to trigger that to be done automagically (may be with some log message). Removing remotes "manually" in heavy datasets hierarchies might be tedious etc
(reproman local version is from run-subjobs branch v0.1.0-539-g2c87dcc)
it was actually complaining about
./containerssubdataset (not this superdataset) already having asmaugremote.I think that ideally
(reproman local version is from run-subjobs branch v0.1.0-539-g2c87dcc)