Should not we just use zcat FILE.gz > FILE in a shell session for this? @chaselgrove:
is there zcat on OSX?
does simple invocation below work for you on OSX? or what version of gunzip --verion you have?
yhalchen@openmind7:~/proj/repronim/reproman
$> git describe
v0.2.1-135-gc8b40e5
*$> reproman execute --trace -r localshell -- reproman --help
2020-08-06 14:41:17,227 [INFO ] Downloading tracer...
2020-08-06 14:41:18,210 [INFO ] Tracer downloaded to /home/yhalchen/.cache/reproman/tracers/d8561c1bc528592b21c0e28d6f32c0a4/reproman_trace.gz
2020-08-06 14:41:18,282 [INFO ] Executed the reproman command in the environment localshell
gzip: unrecognized option '--keep'
Try `gzip --help' for more information.
2020-08-06 14:41:18,283 [ERROR ] Command reproman failed to run in localshell: Failed to run ['gunzip', '--keep', '/home/yhalchen/.cache/reproman/tracers/d8561c1bc528592b21c0e28d6f32c0a4/reproman_trace.gz'] under None. Exit co
de=1. out= err=gzip: unrecognized option '--keep'
Try `gzip --help' for more information.
*$> lsb_release -a
LSB Version: :core-4.1-amd64:core-4.1-noarch
Distributor ID: CentOS
Description: CentOS Linux release 7.7.1908 (Core)
Release: 7.7
$> gzip --help
Usage: gzip [OPTION]... [FILE]...
Compress or uncompress FILEs (by default, compress FILES in-place).
Mandatory arguments to long options are mandatory for short options too.
-c, --stdout write on standard output, keep original files unchanged
-d, --decompress decompress
-f, --force force overwrite of output file and compress links
-h, --help give this help
-l, --list list compressed file contents
-L, --license display software license
-n, --no-name do not save or restore the original name and time stamp
-N, --name save or restore the original name and time stamp
-q, --quiet suppress all warnings
-r, --recursive operate recursively on directories
-S, --suffix=SUF use suffix SUF on compressed files
-t, --test test compressed file integrity
-v, --verbose verbose mode
-V, --version display version number
-1, --fast compress faster
-9, --best compress better
--rsyncable Make rsync-friendly archive
With no FILE, or when FILE is -, read standard input.
Report bugs to <bug-gzip@gnu.org>.
$> gunzip --help
Usage: /usr/bin/gunzip [OPTION]... [FILE]...
Uncompress FILEs (by default, in-place).
Mandatory arguments to long options are mandatory for short options too.
-c, --stdout write on standard output, keep original files unchanged
-f, --force force overwrite of output file and compress links
-l, --list list compressed file contents
-n, --no-name do not save or restore the original name and time stamp
-N, --name save or restore the original name and time stamp
-q, --quiet suppress all warnings
-r, --recursive operate recursively on directories
-S, --suffix=SUF use suffix SUF on compressed files
-t, --test test compressed file integrity
-v, --verbose verbose mode
--help display this help and exit
--version display version information and exit
With no FILE, or when FILE is -, read standard input.
Report bugs to <bug-gzip@gnu.org>.
$> gunzip --version
gunzip (gzip) 1.5
Copyright (C) 2007, 2011-2012 Free Software Foundation, Inc.
and --keep was introduced in 1.6 (on 2013-05-28). zcat seems was there "forever", so is likely to be present where gunzip is.
Should not we just use
zcat FILE.gz > FILE
in a shell session for this? @chaselgrove:gunzip --verion
you have?and
--keep
was introduced in 1.6 (on 2013-05-28).zcat
seems was there "forever", so is likely to be present where gunzip is.