Closed yarikoptic closed 3 years ago
crap -- it took travis a night to run the tests, thought to migrate but somehow the repronim organization does not even give me an option to grant or request, like it was may be denied at some point?
Separate issue discovered (unrelated): https://github.com/ReproNim/reproman/issues/568
I have pushed e5c3b80c7f03b114548113ac0e02694cf546c8ff so we install released datalad, lets see also if above (and the log flood https://github.com/datalad/datalad/issues/5386 ) improves.
But overall I consider this in usable state without immediate side-effects
Individual commits have more information. Changes are quite sloppy but the goal was to make things work:
ec2_condor
and it asking me for which key_name I want as many times (in parallel) as thesize
;) now it would not ask at all!:~/nfs-mount
. Now should function "by default" since~/.reproman
would be symlinked from that location~/.ssh/config
entry likeCloses #567
ATM running a "realistic" test case which entailed (work towards fulfilling #548)
reproman create yoh-aws-hpc2 -t aws-condor -b size=2 -b key_name=my-nitrc -b instance_type=t2.medium
to establish 2 node clusterreproman run -r yoh-aws-hpc2 --sub condor --orc datalad-pair --jp "container=containers/bids-mriqc" --bp subj=02,13 --follow --input 'sourcedata/sub-{p[subj]}' --output . '{inputs}' . participant group -w workdir --participant_label '{p[subj]}'
to mimic the example of https://github.com/ReproNim/containers#a-typical-workflow . Tomorrow will see if/where/how it fails