ReproNim / segstats_jsonld

Script to Export Freesurfer-based Parcellation/Segmentation Stats and Provenance as JSON-LD and NIDM
MIT License
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Cortical Structures do not (yet) have Laterality information #12

Open adswa opened 5 years ago

adswa commented 5 years ago

I think this is ultimately was the cause of #5: Currently, for the creation of the nidm graph with add_seg_data(), anatomical structures are expected to have a laterality associated with them. This is true for the anatomical terms in aseg.stat files, but not for cortical structures in aparc.stat files (see the second sheet in ReproNimCDEs.xlsx). In #11, I mitigate the problem suboptimally by just specifying that the laterality is undefined. Given my lack of freesurfer experience, I don't know whether we should add any information about laterality to these anatomical terms (that would need to be done in the spreadsheet) or have that field empty.