Data

[jsta]

@dustinkincaid @nagelki4 @kingka21 @mill2735

Hey Everyone,

I ran my optical character recognition algorithm on the pdf yesterday in my first attempt at creating the full dataset. You can see the result at: https://raw.githubusercontent.com/jsta/nesR/master/vignettes/res.csv

[jsta]

The following paper has NES data in its supplement: Stomp, M., Huisman, J., Mittelbach, G.G., Litchman, E. and Klausmeier, C.A., 2011. Large‐scale biodiversity patterns in freshwater phytoplankton. Ecology, 92(11), pp.2096-2107.

[kingka21]

Is this all of the data or just some of it that they used? It's a good start. 

Quoting Joseph Stachelek notifications@github.com:

The following paper has NES data in its supplement: Stomp, M., Huisman, J., Mittelbach, G.G., Litchman, E. and Klausmeier, C.A., 2011. Large‐scale biodiversity patterns in freshwater phytoplankton. Ecology, 92(11), pp.2096-2107.

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[jsta]

From what I can all the lakes are there. However, the dataset contains no dates and the columns are incomplete (there is no information on lake residence time, inflow, or drainage area). I'm thinking we could use this dataset to auto QA the lake names which seems to cause the greatest difficulty for the OCR.

I also wonder where the coordinates came from because they are not in pdfs and don't match checks with this package.

[kingka21]

I just tried installing this through my MSU google.docs account, and I'm blocked. I can install from my personal account just fine. Did you have the same problem? If I've just shared the google.doc folder with my personal email -> Heather.Miller@net.elmhurst.edu. Thanks! Heather

 Hi Everyone, 

The first session we were talking about how to cite things in google docs. A friend told me about this awesome add in for google docs! I tested it out and it is pretty sweet.  It also got good reviews.  You can search for your article, click cite, and chose your citation format. The add-in will add the cite and build the bibliography as well! So we should be able to cite our paper as we go, which will save time at the end. 

https://chrome.google.com/webstore/detail/paperpile/imanmdcibgaflfaibbcmmkifdgllfopm?hl=en

Katelyn 

[nagelkirk]

Sweet!

On Thu, Jan 26, 2017 at 1:21 PM, kingka21 notifications@github.com wrote:

Hi Everyone,

The first session we were talking about how to cite things in google docs. A friend told me about this awesome add in for google docs! I tested it out and it is pretty sweet. It also got good reviews. You can search for your article, click cite, and chose your citation format. The add-in will add the cite and build the bibliography as well! So we should be able to cite our paper as we go, which will save time at the end.

https://chrome.google.com/webstore/detail/paperpile/ imanmdcibgaflfaibbcmmkifdgllfopm?hl=en

Katelyn

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[jsta]

@kingka21 @nagelki4 @dustinkincaid @mill2735 @chanse-ford

I have finished the automated pdf scraping. You can find the data for the respective pdfs at:

https://github.com/jsta/nesR/blob/master/474/res.csv https://github.com/jsta/nesR/blob/master/475/res.csv https://github.com/jsta/nesR/blob/master/476/res.csv https://github.com/jsta/nesR/blob/master/477/res.csv

[kingka21]

Nice work! This is awesome and was obviously time consuming. 

Quoting Joseph Stachelek notifications@github.com:

@kingka21 @nagelki4 @dustinkincaid @mill2735 @chanse-ford

I have finished the automated pdf scraping. You can find the data for the respective pdfs at:

https://github.com/jsta/nesR/blob/master/474/res.csv https://github.com/jsta/nesR/blob/master/475/res.csv https://github.com/jsta/nesR/blob/master/476/res.csv https://github.com/jsta/nesR/blob/master/477/res.csv

-- You are receiving this because you were mentioned. Reply to this email directly or view it on GitHub: https://github.com/ReproducibleQM/gReen2O/issues/5#issuecomment-276217017