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ResearchObject / workflow-run-crate

Workflow Run RO-Crate profile
https://www.researchobject.org/workflow-run-crate/
Apache License 2.0
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Updated ml-predict-pipeline-streamflow #45

Closed GlassOfWhiskey closed 1 year ago

simleo commented 1 year ago

File / Dataset data entities need to be linked to from the root data entities via hasPart. Some are missing: the configuration file and the Mirax files under c7398fbf741b851e80ae731d60cbee9258ff81f3.

simleo commented 1 year ago

Thanks for the update! There was only one file left to add to the root entity's hasPart:

    {
       "@id": "f62aa607a75508ac5fc6a22e9c0e39ef58a2c852",
       "@type": "File",
       "alternateName": "Mirax2-Fluorescence-2.mrxs",
       "sha1": "f62aa607a75508ac5fc6a22e9c0e39ef58a2c852"
    }

I just made the change manually in 7a2d77a, you can make the corresponding fix in StreamFlow separately.

I've also reverted the change to consume_crate, which maybe was accidental since it was overwriting it with the version from runcrate. Anyway, the tool has been moved to runcrate a while ago and I forgot to delete it from this repo, sorry. I'm doing that now in https://github.com/ResearchObject/workflow-run-crate/pull/46.